Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G24540 - ( AGL24 (AGAMOUS-LIKE 24) protein binding / protein heterodimerization/ protein homodimerization/ sequence-specific DNA binding / transcription factor )

20 Proteins interacs with AT4G24540
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G75950

Experimental

pull down

FSW = 0.0212

Class A:

nucleus

cytosol

Class B:

plasma membrane

SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G69120

Experimental

two hybrid

two hybrid

two hybrid

FSW = 0.4237

Class A:

nucleus

cytosol

Class D:

nucleus (p = 0.78)

AP1 (APETALA1) DNA BINDING / PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR
AT3G57230

Experimental

two hybrid

FSW = 0.5523

Class A:

nucleus

Class B:

cytosol

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

AGL16 (AGAMOUS-LIKE 16) TRANSCRIPTION FACTOR
AT5G23260

Experimental

FSW = 0.3584

Class A:

nucleus

Class B:

cytosol

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

TT16 (TRANSPARENT TESTA16) TRANSCRIPTION FACTOR
AT4G37940

Experimental

two hybrid

FSW = 0.4230

Class A:

nucleus

Class B:

cytosol

Class D:

plastid (p = 0.78)

AGL21 TRANSCRIPTION FACTOR
AT1G24260

Experimental

two hybrid

FSW = 0.5134

Class A:

nucleus

Class B:

cytosol

Class D:

nucleus (p = 0.78)

SEP3 (SEPALLATA3) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT1G26310

Experimental

two hybrid

FSW = 0.3333

Class A:

nucleus

Class B:

cytosol

Class D:

nucleus (p = 0.78)

CAL (CAULIFLOWER) DNA BINDING / TRANSCRIPTION FACTOR
AT5G15800

Experimental

two hybrid

FSW = 0.5630

Class A:

nucleus

Class B:

cytosol

Class D:

nucleus (p = 0.78)

SEP1 (SEPALLATA1) DNA BINDING / TRANSCRIPTION FACTOR
AT4G18960

Experimental

two hybrid

FSW = 0.4519

Class A:

nucleus

Class B:

cytosol

Class D:

nucleus (p = 0.78)

AG (AGAMOUS) DNA BINDING / TRANSCRIPTION FACTOR
AT1G25280

Experimental

FSW = 0.1977

Class B:

plasma membrane

nucleus

cytosol

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

ATTLP10 (TUBBY LIKE PROTEIN 10) PHOSPHORIC DIESTER HYDROLASE/ TRANSCRIPTION FACTOR
AT5G13790

Experimental

two hybrid

FSW = 0.5042

Class B:

plasma membrane

nucleus

cytosol

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

AGL15 (AGAMOUS-LIKE 15) DNA BINDING / TRANSCRIPTION FACTOR
AT2G18040

Experimental

pull down

FSW = 0.0259

Class B:

plasma membrane

nucleus

cytosol

PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE NIMA-INTERACTING 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT2G22540

Experimental

FSW = 0.5091

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

SVP (SHORT VEGETATIVE PHASE) TRANSCRIPTION FACTOR/ TRANSLATION REPRESSOR NUCLEIC ACID BINDING
AT5G60910

Experimental

two hybrid

FSW = 0.5376

Class D:

nucleus (p = 0.78)

AGL8 (AGAMOUS-LIKE 8) TRANSCRIPTION FACTOR
AT4G11880

Experimental

two hybrid

FSW = 0.5818

Class D:

nucleus (p = 0.78)

AGL14 (AGAMOUS-LIKE 14) DNA BINDING / TRANSCRIPTION FACTOR
AT2G45660

Experimental

two hybrid

FSW = 0.5682

Class D:

nucleus (p = 0.78)

AGL20 (AGAMOUS-LIKE 20) TRANSCRIPTION FACTOR
AT3G58780

Experimental

two hybrid

FSW = 0.5814

Class D:

nucleus (p = 0.78)

SHP1 (SHATTERPROOF 1) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT2G45650

Experimental

two hybrid

FSW = 0.5222

Class D:

nucleus (p = 0.78)

AGL6 (AGAMOUS-LIKE 6) DNA BINDING / TRANSCRIPTION FACTOR
AT5G42190

Experimental

pull down

FSW = 0.0138

Unknown

ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G56100Experimental

two hybrid

Reconstituted Complex

biochemical

inferred by author

FSW = 0.0381

Unknown

MRLK (MERISTEMATIC RECEPTOR-LIKE KINASE) ATP BINDING / PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454