Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT4G24740 - ( AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2) kinase/ protein kinase )
28 Proteins interacs with AT4G24740Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G55310 | Experimentalprotein kinase assaypull downReconstituted Complex | FSW = 0.0924
| Unknown | SR33 RNA BINDING / PROTEIN BINDING |
AT1G16610 | Experimentalprotein kinase assaypull down | FSW = 0.0373
| Unknown | SR45 RNA BINDING / PROTEIN BINDING |
AT1G23860 | Experimentalinteraction detection method | FSW = 0.0683
| Unknown | RSZP21 (RS-CONTAINING ZINC FINGER PROTEIN 21) PROTEIN BINDING |
AT4G31580 | ExperimentalReconstituted Complex | FSW = 0.0645
| Unknown | SRZ-22 PROTEIN BINDING |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0026
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT2G41100 | PredictedShared biological functionGene fusion method | FSW = 0.0662
| Unknown | TCH3 (TOUCH 3) CALCIUM ION BINDING |
AT3G48870 | Predictedsynthetic growth defect | FSW = 0.0417
| Unknown | HSP93-III ATP BINDING / ATPASE/ DNA BINDING / NUCLEASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G46110 | Predictedinterologs mappingsynthetic growth defect | FSW = 0.0746
| Unknown | APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2) ANTIPORTER/ TRIOSE-PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT3G07560 | Predictedsynthetic growth defect | FSW = 0.0843
| Unknown | PEX13 (PEROXIN 13) PROTEIN BINDING |
AT1G02840 | Predictedtwo hybrid | FSW = 0.0980
| Unknown | SR1 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT1G72050 | PredictedGene fusion method | FSW = 0.0313
| Unknown | TFIIIA (TRANSCRIPTION FACTOR IIIA) 5S RDNA BINDING / 5S RRNA BINDING / NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT3G01220 | Predictedtwo hybrid | FSW = 0.0860
| Unknown | ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20) DNA BINDING / TRANSCRIPTION FACTOR |
AT3G25840 | Predictedtwo hybrid | FSW = 0.1492
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G25980 | Predictedtwo hybrid | FSW = 0.0197
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT5G20850 | Predictedtwo hybrid | FSW = 0.0267
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT1G31870 | Predictedtwo hybrid | FSW = 0.1471
| Unknown | UNKNOWN PROTEIN |
AT1G32130 | Predictedtwo hybrid | FSW = 0.0101
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK) |
AT2G44200 | Predictedtwo hybrid | FSW = 0.0693
| Unknown | UNKNOWN PROTEIN |
AT3G54230 | Predictedtwo hybrid | FSW = 0.0321
| Unknown | NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
AT3G57870 | Predictedtwo hybrid | FSW = 0.0382
| Unknown | SCE1 (SUMO CONJUGATION ENZYME 1) SUMO LIGASE |
AT1G26830 | Predictedtwo hybrid | FSW = 0.0308
| Unknown | ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G42190 | Predictedtwo hybrid | FSW = 0.0220
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G47240 | Predictedtwo hybrid | FSW = 0.1112
| Unknown | ATNUDT8 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 8) HYDROLASE |
AT5G09880 | Predictedtwo hybrid | FSW = 0.1089
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G55260 | Predictedtwo hybrid | FSW = 0.0840
| Unknown | PPX2 (PROTEIN PHOSPHATASE X 2) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G59160 | Predictedtwo hybrid | FSW = 0.0373
| Unknown | TOPP2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G32660 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3743
| Unknown | AME3 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G14100 | PredictedGene fusion method | FSW = 0.0136
| Unknown | OLIGOURIDYLATE-BINDING PROTEIN PUTATIVE |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454