Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G24740 - ( AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2) kinase/ protein kinase )

28 Proteins interacs with AT4G24740
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G55310

Experimental

protein kinase assay

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Reconstituted Complex

FSW = 0.0924

Unknown

SR33 RNA BINDING / PROTEIN BINDING
AT1G16610

Experimental

protein kinase assay

pull down

FSW = 0.0373

Unknown

SR45 RNA BINDING / PROTEIN BINDING
AT1G23860

Experimental

interaction detection method

FSW = 0.0683

Unknown

RSZP21 (RS-CONTAINING ZINC FINGER PROTEIN 21) PROTEIN BINDING
AT4G31580

Experimental

Reconstituted Complex

FSW = 0.0645

Unknown

SRZ-22 PROTEIN BINDING
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0026

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT2G41100

Predicted

Shared biological function

Gene fusion method

FSW = 0.0662

Unknown

TCH3 (TOUCH 3) CALCIUM ION BINDING
AT3G48870

Predicted

synthetic growth defect

FSW = 0.0417

Unknown

HSP93-III ATP BINDING / ATPASE/ DNA BINDING / NUCLEASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G46110

Predicted

interologs mapping

synthetic growth defect

FSW = 0.0746

Unknown

APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2) ANTIPORTER/ TRIOSE-PHOSPHATE TRANSMEMBRANE TRANSPORTER
AT3G07560

Predicted

synthetic growth defect

FSW = 0.0843

Unknown

PEX13 (PEROXIN 13) PROTEIN BINDING
AT1G02840

Predicted

two hybrid

FSW = 0.0980

Unknown

SR1 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT1G72050

Predicted

Gene fusion method

FSW = 0.0313

Unknown

TFIIIA (TRANSCRIPTION FACTOR IIIA) 5S RDNA BINDING / 5S RRNA BINDING / NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT3G01220

Predicted

two hybrid

FSW = 0.0860

Unknown

ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20) DNA BINDING / TRANSCRIPTION FACTOR
AT3G25840

Predicted

two hybrid

FSW = 0.1492

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT3G25980

Predicted

two hybrid

FSW = 0.0197

Unknown

MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2)
AT5G20850

Predicted

two hybrid

FSW = 0.0267

Unknown

ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT1G31870

Predicted

two hybrid

FSW = 0.1471

Unknown

UNKNOWN PROTEIN
AT1G32130

Predicted

two hybrid

FSW = 0.0101

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK)
AT2G44200

Predicted

two hybrid

FSW = 0.0693

Unknown

UNKNOWN PROTEIN
AT3G54230

Predicted

two hybrid

FSW = 0.0321

Unknown

NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING
AT3G57870

Predicted

two hybrid

FSW = 0.0382

Unknown

SCE1 (SUMO CONJUGATION ENZYME 1) SUMO LIGASE
AT1G26830

Predicted

two hybrid

FSW = 0.0308

Unknown

ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G42190

Predicted

two hybrid

FSW = 0.0220

Unknown

ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G47240

Predicted

two hybrid

FSW = 0.1112

Unknown

ATNUDT8 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 8) HYDROLASE
AT5G09880

Predicted

two hybrid

FSW = 0.1089

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT5G55260

Predicted

two hybrid

FSW = 0.0840

Unknown

PPX2 (PROTEIN PHOSPHATASE X 2) PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G59160

Predicted

two hybrid

FSW = 0.0373

Unknown

TOPP2 PROTEIN SERINE/THREONINE PHOSPHATASE
AT4G32660

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.3743

Unknown

AME3 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G14100

Predicted

Gene fusion method

FSW = 0.0136

Unknown

OLIGOURIDYLATE-BINDING PROTEIN PUTATIVE

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454