Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G24820 - ( 26S proteasome regulatory subunit putative (RPN7) )
50 Proteins interacs with AT4G24820| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G22630
   | PredictedAffinity Capture-MSCo-expression | FSW = 0.3046
| Class C:plasma membrane | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT1G45000
| PredictedAffinity Capture-MSCo-expression | FSW = 0.5241
| Class C:plasma membrane | 26S PROTEASOME REGULATORY COMPLEX SUBUNIT P42D PUTATIVE |
| AT1G04810
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5036
| Class C:plasma membrane | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
| AT2G20580
| PredictedCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3804
| Class C:plasma membrane | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
| AT1G53750
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4522
| Class C:plasma membrane | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
| AT5G19990
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3004
| Class C:plasma membrane | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
| AT2G20140
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5671
| Class C:plasma membrane | 26S PROTEASE REGULATORY COMPLEX SUBUNIT 4 PUTATIVE |
| AT5G42790
| PredictedAffinity Capture-MS | FSW = 0.3633
| Class C:plasma membrane | PAF1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT1G09100
| PredictedAffinity Capture-MS | FSW = 0.5487
| Class C:plasma membrane | RPT5B (26S PROTEASOME AAA-ATPASE SUBUNIT RPT5B) ATPASE/ CALMODULIN BINDING |
| AT1G75990
| PredictedAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-MStwo hybridtwo hybridAffinity Capture-MS | FSW = 0.4445
| Class C:plasma membrane | 26S PROTEASOME REGULATORY SUBUNIT S3 PUTATIVE (RPN3) |
| AT1G20200
| Predictedinteraction predictiontwo hybridtwo hybridAffinity Capture-MSAffinity Capture-MStwo hybridCo-expression | FSW = 0.4569
| Class C:plasma membrane | EMB2719 (EMBRYO DEFECTIVE 2719) ENZYME REGULATOR |
| AT3G51260
| PredictedAffinity Capture-MS | FSW = 0.3087
| Unknown | PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT4G14800
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2919
| Unknown | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT1G58030
| PredictedAffinity Capture-MS | FSW = 0.0290
| Unknown | CAT2 (CATIONIC AMINO ACID TRANSPORTER 2) AMINO ACID TRANSMEMBRANE TRANSPORTER |
| AT1G11860
| Predictedtwo hybridtwo hybrid | FSW = 0.0232
| Unknown | AMINOMETHYLTRANSFERASE PUTATIVE |
| AT3G05530
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5533
| Unknown | RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) ATPASE/ CALMODULIN BINDING |
| AT1G16470
| PredictedAffinity Capture-MS | FSW = 0.2235
| Unknown | PAB1 (PROTEASOME SUBUNIT PAB1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT5G58290
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.5795
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
| AT1G27150
| Predictedtwo hybrid | FSW = 0.0755
| Unknown | BINDING |
| AT1G29150
| PredictedCo-purificationCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3720
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
| AT1G53780
| PredictedAffinity Capture-MS | FSW = 0.3093
| Unknown | ATP BINDING / ATPASE/ HYDROLASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
| AT1G64520
| PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4831
| Unknown | RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE |
| AT1G79210
| PredictedAffinity Capture-MS | FSW = 0.0983
| Unknown | 20S PROTEASOME ALPHA SUBUNIT B PUTATIVE |
| AT2G32730
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4042
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
| AT3G17205
| PredictedAffinity Capture-Western | FSW = 0.1374
| Unknown | UPL6 (UBIQUITIN PROTEIN LIGASE 6) UBIQUITIN-PROTEIN LIGASE |
| AT3G26340
| PredictedAffinity Capture-MS | FSW = 0.0612
| Unknown | 20S PROTEASOME BETA SUBUNIT E PUTATIVE |
| AT3G48470
| PredictedAffinity Capture-MS | FSW = 0.0074
| Unknown | EMB2423 (EMBRYO DEFECTIVE 2423) |
| AT4G19006
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5961
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
| AT5G45620
| PredictedAffinity Capture-MS | FSW = 0.1297
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
| AT4G28470
| PredictedAffinity Capture-MS | FSW = 0.1356
| Unknown | RPN1B (26S PROTEASOME REGULATORY SUBUNIT S2 1B) BINDING / ENZYME REGULATOR |
| AT4G29040
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5760
| Unknown | RPT2A (REGULATORY PARTICLE AAA-ATPASE 2A) ATPASE |
| AT5G05780
| PredictedAffinity Capture-MS | FSW = 0.2427
| Unknown | RPN8A (RP NON-ATPASE SUBUNIT 8A) |
| AT5G09900
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.5238
| Unknown | EMB2107 (EMBRYO DEFECTIVE 2107) |
| AT5G20000
| PredictedAffinity Capture-MS | FSW = 0.2276
| Unknown | 26S PROTEASOME AAA-ATPASE SUBUNIT PUTATIVE |
| AT5G23540
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.5364
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
| AT5G42040
| PredictedAffinity Capture-MS | FSW = 0.0623
| Unknown | RPN12B (REGULATORY PARTICLE NON-ATPASE 12B) PEPTIDASE |
| AT5G43010
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5223
| Unknown | RPT4A ATPASE |
| AT5G64760
| PredictedAffinity Capture-MS | FSW = 0.0116
| Unknown | RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) |
| AT3G05090
| PredictedAffinity Capture-MS | FSW = 0.0151
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT3G11270
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.5209
| Unknown | MEE34 (MATERNAL EFFECT EMBRYO ARREST 34) |
| AT1G51710
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2757
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
| AT1G79990
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0132
| Unknown | LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK) |
| AT2G03430
| PredictedAffinity Capture-MS | FSW = 0.5061
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
| AT3G13970
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1346
| Unknown | APG12B (AUTOPHAGY 12 B) |
| AT4G38630
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2197
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
| AT5G40440
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0290
| Unknown | ATMKK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 3) MAP KINASE KINASE |
| AT1G64750
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-expression | FSW = 0.3536
| Unknown | ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I)) |
| AT1G54210
| PredictedAffinity Capture-MS | FSW = 0.1525
| Unknown | ATG12A (AUTOPHAGY 12 A) PROTEIN BINDING |
| AT1G52360
| PredictedAffinity Capture-MS | FSW = 0.0149
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE |
| AT4G28088
| Predictedinteraction prediction | FSW = 0.0367
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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