Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G25150 - ( acid phosphatase putative )
27 Proteins interacs with AT4G25150Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G16480 | PredictedAffinity Capture-MS | FSW = 0.0489
| Unknown | MPPALPHA (MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ ZINC ION BINDING |
AT2G34480 | PredictedAffinity Capture-Western | FSW = 0.0124
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AB) |
AT1G31780 | Predictedtwo hybridAffinity Capture-Western | FSW = 0.0177
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT5G26030 | PredictedAffinity Capture-MS | FSW = 0.0087
| Unknown | FC1 (FERROCHELATASE 1) FERROCHELATASE |
AT1G16030 | PredictedAffinity Capture-MS | FSW = 0.0049
| Unknown | HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING |
AT3G48170 | PredictedPhenotypic Enhancement | FSW = 0.0157
| Unknown | ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE |
AT2G25140 | PredictedAffinity Capture-MS | FSW = 0.0258
| Unknown | CLPB4 (CASEIN LYTIC PROTEINASE B4) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G10080 | PredictedAffinity Capture-MS | FSW = 0.0324
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
AT2G07640 | PredictedAffinity Capture-MS | FSW = 0.0375
| Unknown | D2D4-DIENOYL-COA REDUCTASE-RELATED |
AT1G79020 | PredictedAffinity Capture-MS | FSW = 0.0427
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT4G31720 | PredictedAffinity Capture-MS | FSW = 0.0208
| Unknown | TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR |
AT2G41380 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0303
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT4G31470 | Predictedtwo hybrid | FSW = 0.0232
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT4G17190 | PredictedPhenotypic Enhancement | FSW = 0.0173
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G03070 | PredictedAffinity Capture-MS | FSW = 0.0356
| Unknown | GLUTAMATE BINDING |
AT1G22550 | PredictedAffinity Capture-MS | FSW = 0.0267
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT1G25260 | PredictedAffinity Capture-WesternAffinity Capture-WesternReconstituted Complex | FSW = 0.0196
| Unknown | ACIDIC RIBOSOMAL PROTEIN P0-RELATED |
AT2G34750 | PredictedPhenotypic Suppression | FSW = 0.0149
| Unknown | RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN |
AT2G44820 | PredictedAffinity Capture-MS | FSW = 0.0606
| Unknown | UNKNOWN PROTEIN |
AT3G13060 | PredictedAffinity Capture-MS | FSW = 0.0184
| Unknown | ECT5 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S YT521-B-LIKE PROTEIN (INTERPROIPR007275) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS ECT2 PROTEIN BINDING (TAIRAT3G134601) HAS 1007 BLAST HITS TO 965 PROTEINS IN 147 SPECIES ARCHAE - 0 BACTERIA - 8 METAZOA - 528 FUNGI - 103 PLANTS - 235 VIRUSES - 0 OTHER EUKARYOTES - 133 (SOURCE NCBI BLINK) |
AT3G27580 | PredictedAffinity Capture-MS | FSW = 0.0797
| Unknown | ATPK7 KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G04950 | PredictedAffinity Capture-MS | FSW = 0.0127
| Unknown | THIOREDOXIN FAMILY PROTEIN |
AT4G14670 | PredictedAffinity Capture-MS | FSW = 0.0556
| Unknown | CLPB2 ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT4G36050 | PredictedAffinity Capture-MSAffinity Capture-MSbiochemical | FSW = 0.0143
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT5G05070 | PredictedPhenotypic Enhancement | FSW = 0.0162
| Unknown | ZINC ION BINDING |
AT4G37680 | PredictedAffinity Capture-MS | FSW = 0.0323
| Unknown | HHP4 (HEPTAHELICAL PROTEIN 4) RECEPTOR |
AT5G37830 | PredictedAffinity Capture-Western | FSW = 0.1031
| Unknown | OXP1 (OXOPROLINASE 1) 5-OXOPROLINASE (ATP-HYDROLYZING)/ HYDROLASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454