Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT4G25210 - ( transcription regulator )

13 Proteins interacs with AT4G25210
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G21350

Experimental

FSW = 0.0192

Unknown

RNA POLYMERASE TRANSCRIPTIONAL REGULATION MEDIATOR-RELATED
AT3G62030

Predicted

Synthetic Rescue

FSW = 0.1645

Class C:

nucleus

PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CHLOROPLAST / CYCLOPHILIN / ROTAMASE / CYCLOSPORIN A-BINDING PROTEIN (ROC4)
AT5G43900

Predicted

biochemical

FSW = 0.0400

Class C:

nucleus

MYA2 (ARABIDOPSIS MYOSIN 2) GTP-DEPENDENT PROTEIN BINDING / RAB GTPASE BINDING / MOTOR
AT2G03870

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.0454

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT3G62870

Predicted

Phenotypic Suppression

FSW = 0.0125

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT1G52600

Predicted

biochemical

FSW = 0.0476

Unknown

SIGNAL PEPTIDASE PUTATIVE
AT4G19690

Predicted

interologs mapping

FSW = 0.1385

Unknown

IRT1 (IRON-REGULATED TRANSPORTER 1) CADMIUM ION TRANSMEMBRANE TRANSPORTER/ COPPER UPTAKE TRANSMEMBRANE TRANSPORTER/ IRON ION TRANSMEMBRANE TRANSPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER
AT5G02490

Predicted

interologs mapping

FSW = 0.0720

Unknown

HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2)
AT1G59960

Predicted

interologs mapping

Synthetic Lethality

FSW = 0.1059

Unknown

ALDO/KETO REDUCTASE PUTATIVE
AT2G47090

Predicted

Synthetic Rescue

two hybrid

Affinity Capture-Western

biochemical

FSW = 0.1684

Unknown

NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING
AT3G46320Predicted

biochemical

FSW = 0.0118

Unknown

HISTONE H4
AT4G30540

Predicted

interologs mapping

FSW = 0.0756

Unknown

GLUTAMINE AMIDOTRANSFERASE CLASS-I DOMAIN-CONTAINING PROTEIN
AT5G20000

Predicted

interologs mapping

FSW = 0.0827

Unknown

26S PROTEASOME AAA-ATPASE SUBUNIT PUTATIVE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454