Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G25490 - ( CBF1 (C-REPEAT/DRE BINDING FACTOR 1) DNA binding / transcription activator/ transcription factor )

6 Proteins interacs with AT4G25490
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G54610

Experimental

Reconstituted Complex

FSW = 0.0338

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT5G25810

Experimental

FSW = 0.0585

Class D:

nucleus (p = 0.78)

TNY (TINY) DNA BINDING / TRANSCRIPTION FACTOR
AT4G16420

Experimental

Reconstituted Complex

two hybrid

FSW = 0.0243

Class D:

nucleus (p = 0.78)

ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR
AT3G07740

Experimental

Reconstituted Complex

FSW = 0.0493

Unknown

ADA2A (HOMOLOG OF YEAST ADA2 2A) DNA BINDING / TRANSCRIPTION FACTOR
AT5G51990

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1973

Unknown

CBF4 (C- REPEAT-BINDING FACTOR 4) DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR
AT4G25480

Predicted

Shared biological function

Phylogenetic profile method

Co-expression

FSW = 0.1170

Unknown

DREB1A (DEHYDRATION RESPONSE ELEMENT B1A) DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454