Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G25950 - ( VATG3 (vacuolar ATP synthase G3) hydrolase acting on acid anhydrides catalyzing transmembrane movement of substances )
66 Proteins interacs with AT4G25950Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G17360 | PredictedSynthetic Lethalityinterologs mapping | FSW = 0.0606
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT3G01390 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0245
| Unknown | VMA10 (VACUOLAR MEMBRANE ATPASE 10) HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM |
AT4G11150 | Predictedtwo hybridtwo hybrid | FSW = 0.0101
| Unknown | TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT5G23670 | Predictedtwo hybrid | FSW = 0.0166
| Unknown | LCB2 PROTEIN BINDING / SERINE C-PALMITOYLTRANSFERASE |
AT5G07090 | PredictedAffinity Capture-MSAffinity Capture-MSbiochemical | FSW = 0.1088
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4B) |
AT4G23710 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0317
| Unknown | VAG2 HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT1G74560 | Predictedtwo hybrid | FSW = 0.1572
| Unknown | NRP1 (NAP1-RELATED PROTEIN 1) DNA BINDING / CHROMATIN BINDING / HISTONE BINDING |
AT5G01410 | Predictedinterologs mapping | FSW = 0.0047
| Unknown | RSR4 (REDUCED SUGAR RESPONSE 4) PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION |
AT3G22890 | Predictedsynthetic growth defect | FSW = 0.1217
| Unknown | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
AT3G62030 | Predictedinterologs mapping | FSW = 0.0291
| Unknown | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CHLOROPLAST / CYCLOPHILIN / ROTAMASE / CYCLOSPORIN A-BINDING PROTEIN (ROC4) |
AT5G06290 | PredictedPhenotypic Enhancementbiochemical | FSW = 0.0805
| Unknown | 2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN |
AT5G15450 | PredictedPhenotypic Suppression | FSW = 0.0752
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G51820 | PredictedPhenotypic Enhancement | FSW = 0.0924
| Unknown | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
AT1G10070 | PredictedPhenotypic EnhancementPhenotypic EnhancementAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSReconstituted ComplexPhenotypic Enhancement | FSW = 0.1010
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT1G48860 | PredictedPhenotypic Enhancement | FSW = 0.1176
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE |
AT1G04750 | PredictedPhenotypic Suppressionsynthetic growth defect | FSW = 0.0785
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT2G44690 | Predictedinterologs mapping | FSW = 0.0143
| Unknown | ARAC9 GTP BINDING |
AT5G26340 | Predictedbiochemical | FSW = 0.0263
| Unknown | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G19690 | Predictedinterologs mapping | FSW = 0.0180
| Unknown | IRT1 (IRON-REGULATED TRANSPORTER 1) CADMIUM ION TRANSMEMBRANE TRANSPORTER/ COPPER UPTAKE TRANSMEMBRANE TRANSPORTER/ IRON ION TRANSMEMBRANE TRANSPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER |
AT4G11380 | Predictedtwo hybrid | FSW = 0.0177
| Unknown | BETA-ADAPTIN PUTATIVE |
AT1G80050 | PredictedPhenotypic Suppression | FSW = 0.0979
| Unknown | APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT2G37790 | Predictedbiochemical | FSW = 0.0530
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT2G30260 | Predictedbiochemical | FSW = 0.0037
| Unknown | U2B (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT1G21700 | Predictedbiochemical | FSW = 0.0828
| Unknown | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT1G75560 | Predictedbiochemical | FSW = 0.0184
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT2G44510 | PredictedPhenotypic Suppression | FSW = 0.0434
| Unknown | P21CIP1-BINDING PROTEIN-RELATED |
AT2G40290 | PredictedAffinity Capture-Westerninterologs mapping | FSW = 0.0191
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
AT1G60850 | Predictedbiochemical | FSW = 0.0321
| Unknown | ATRPAC42 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT4G12590 | Predictedbiochemical | FSW = 0.0122
| Unknown | UNKNOWN PROTEIN |
AT5G24090 | PredictedSynthetic Lethality | FSW = 0.1338
| Unknown | ACIDIC ENDOCHITINASE (CHIB1) |
AT4G39200 | Predictedsynthetic growth defect | FSW = 0.1553
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT3G13320 | Predictedbiochemical | FSW = 0.0361
| Unknown | CAX2 (CATION EXCHANGER 2) CALCIUMCATION ANTIPORTER/ CALCIUMHYDROGEN ANTIPORTER |
AT3G19510 | PredictedSynthetic LethalitySynthetic RescuePhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementSynthetic LethalitySynthetic Rescue | FSW = 0.0772
| Unknown | HAT31 DNA BINDING / SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT1G50240 | Predictedtwo hybrid | FSW = 0.0464
| Unknown | FU (FUSED) PROTEIN SERINE/THREONINE KINASE |
AT3G05000 | Predictedtwo hybridtwo hybrid | FSW = 0.0244
| Unknown | TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 FAMILY PROTEIN |
AT1G10210 | Predictedinterologs mapping | FSW = 0.1261
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT1G12390 | PredictedAffinity Capture-Western | FSW = 0.0474
| Unknown | CORNICHON FAMILY PROTEIN |
AT1G15240 | Predictedbiochemical | FSW = 0.0206
| Unknown | PHOX (PX) DOMAIN-CONTAINING PROTEIN |
AT1G26690 | PredictedPhenotypic Enhancement | FSW = 0.0871
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G29630 | PredictedPhenotypic Suppression | FSW = 0.0170
| Unknown | NUCLEASE |
AT1G60680 | PredictedAffinity Capture-WesternbiochemicalSynthetic Rescue | FSW = 0.0805
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT2G01770 | Predictedbiochemical | FSW = 0.0086
| Unknown | VIT1 (VACUOLAR IRON TRANSPORTER 1) IRON ION TRANSMEMBRANE TRANSPORTER |
AT2G36060 | Predictedbiochemical | FSW = 0.0323
| Unknown | UBIQUITIN-CONJUGATING ENZYME FAMILY PROTEIN |
AT2G37760 | Predictedbiochemical | FSW = 0.0161
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT2G38490 | PredictedPhenotypic Enhancement | FSW = 0.0804
| Unknown | CIPK22 (CBL-INTERACTING PROTEIN KINASE 22) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT2G47090 | Predictedinterologs mappingSynthetic Lethality | FSW = 0.0525
| Unknown | NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT3G11230 | PredictedPhenotypic Enhancement | FSW = 0.0988
| Unknown | YIPPEE FAMILY PROTEIN |
AT3G18660 | Predictedbiochemical | FSW = 0.1145
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G22290 | PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.1734
| Unknown | UNKNOWN PROTEIN |
AT3G50960 | Predictedbiochemical | FSW = 0.0361
| Unknown | PLP3A (PHOSDUCIN-LIKE PROTEIN 3 HOMOLOG) BETA-TUBULIN BINDING |
AT3G59540 | PredictedPhenotypic Enhancement | FSW = 0.0953
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT4G05440 | Predictedbiochemical | FSW = 0.0193
| Unknown | EDA35 (EMBRYO SAC DEVELOPMENT ARREST 35) |
AT4G09310 | Predictedbiochemical | FSW = 0.0644
| Unknown | SPLA/RYANODINE RECEPTOR (SPRY) DOMAIN-CONTAINING PROTEIN |
AT4G20280 | PredictedAffinity Capture-MS | FSW = 0.0697
| Unknown | TAF11 (TBP-ASSOCIATED FACTOR 11) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
AT4G21490 | PredictedPhenotypic Enhancement | FSW = 0.1323
| Unknown | NDB3 NADH DEHYDROGENASE |
AT1G35350 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.1699
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK) |
AT1G55060 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1467
| Unknown | UBQ12 (UBIQUITIN 12) PROTEIN BINDING |
AT2G26695 | Predictedinterologs mapping | FSW = 0.0496
| Unknown | BINDING / ZINC ION BINDING |
AT4G27130 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.1963
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT5G38030 | PredictedPhenotypic Enhancement | FSW = 0.0913
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT4G29140 | PredictedAffinity Capture-MS | FSW = 0.0075
| Unknown | MATE EFFLUX PROTEIN-RELATED |
AT4G38250 | PredictedPhenotypic Enhancement | FSW = 0.0732
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT5G09290 | PredictedPhenotypic Enhancement | FSW = 0.0206
| Unknown | 3(2)5-BISPHOSPHATE NUCLEOTIDASE PUTATIVE / INOSITOL POLYPHOSPHATE 1-PHOSPHATASE PUTATIVE |
AT5G49970 | PredictedPhenotypic Enhancement | FSW = 0.0885
| Unknown | ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE |
AT1G50230 | Predictedtwo hybrid | FSW = 0.0290
| Unknown | ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE |
AT3G48780 | Predictedtwo hybrid | FSW = 0.0331
| Unknown | SPT1 (SERINE PALMITOYLTRANSFERASE 1) SERINE C-PALMITOYLTRANSFERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454