Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G25960 - ( PGP2 (P-GLYCOPROTEIN 2) ATPase coupled to transmembrane movement of substances )
32 Proteins interacs with AT4G25960Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G62150 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.4717
| Unknown | PGP21 (P-GLYCOPROTEIN 21) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0066
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G65430 | PredictedPhenotypic Suppression | FSW = 0.0132
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G28415 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.7778
| Unknown | P-GLYCOPROTEIN PUTATIVE |
AT3G28380 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.7424
| Unknown | PGP17 (P-GLYCOPROTEIN 17) ATP BINDING / ATPASE/ ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G28345 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.7424
| Unknown | ABC TRANSPORTER FAMILY PROTEIN |
AT3G28860 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.6950
| Unknown | ABCB19 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / AUXIN EFFLUX TRANSMEMBRANE TRANSPORTER |
AT2G36910 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.6861
| Unknown | ABCB1 (ATP BINDING CASSETTE SUBFAMILY B1) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / AUXIN EFFLUX TRANSMEMBRANE TRANSPORTER/ CALMODULIN BINDING |
AT5G26340 | Predictedtwo hybrid | FSW = 0.0137
| Unknown | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G02520 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.7021
| Unknown | PGP11 (P-GLYCOPROTEIN 11) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT2G39480 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.2964
| Unknown | PGP6 (P-GLYCOPROTEIN 6) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT2G47000 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.5833
| Unknown | ABCB4 (ATP BINDING CASSETTE SUBFAMILY B4) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / XENOBIOTIC-TRANSPORTING ATPASE |
AT3G55320 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.7778
| Unknown | PGP20 (P-GLYCOPROTEIN 20) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT1G10680 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.7597
| Unknown | PGP10 (P-GLYCOPROTEIN 10) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT1G70190 | Predictedtwo hybrid | FSW = 0.0596
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
AT4G15900 | Predictedtwo hybrid | FSW = 0.0233
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT2G29540 | Predictedinterologs mappinginterologs mappingPhenotypic Enhancement | FSW = 0.0074
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT1G29230 | PredictedPhenotypic EnhancementAffinity Capture-Westerntwo hybridsynthetic growth defectsynthetic growth defecttwo hybridsynthetic growth defectSynthetic LethalityPhenotypic Enhancement | FSW = 0.1690
| Unknown | CIPK18 (CBL-INTERACTING PROTEIN KINASE 18) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G61670 | PredictedPhenotypic Suppression | FSW = 0.0626
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G109801) HAS 473 BLAST HITS TO 471 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 242 FUNGI - 99 PLANTS - 92 VIRUSES - 0 OTHER EUKARYOTES - 38 (SOURCE NCBI BLINK) |
AT1G76920 | PredictedPhenotypic Suppression | FSW = 0.0299
| Unknown | F-BOX FAMILY PROTEIN (FBX3) |
AT3G61210 | Predictedinterologs mappinginterologs mappingPhenotypic Enhancement | FSW = 0.1441
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT1G71530 | Predictedtwo hybrid | FSW = 0.0942
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G05040 | Predictedtwo hybrid | FSW = 0.0500
| Unknown | HST (HASTY) NUCLEOCYTOPLASMIC TRANSPORTER |
AT3G28360 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.7489
| Unknown | PGP16 (P-GLYCOPROTEIN 16) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT3G28390 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.7778
| Unknown | PGP18 (P-GLYCOPROTEIN 18) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT5G46540 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.7021
| Unknown | PGP7 (P-GLYCOPROTEIN 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT1G27940 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.7363
| Unknown | PGP13 (P-GLYCOPROTEIN 13) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT4G18050 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.7547
| Unknown | PGP9 (P-GLYCOPROTEIN 9) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT1G28010 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.7778
| Unknown | PGP14 (P-GLYCOPROTEIN 14) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT4G01830 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile method | FSW = 0.7778
| Unknown | PGP5 (P-GLYCOPROTEIN 5) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT4G01820 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile method | FSW = 0.7597
| Unknown | PGP3 (P-GLYCOPROTEIN 3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT1G02530 | PredictedEnriched domain pairGene fusion methodPhylogenetic profile method | FSW = 0.7547
| Unknown | PGP12 (P-GLYCOPROTEIN 12) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454