Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G26070 - ( MEK1 (MAP KINASE/ ERK KINASE 1) MAP kinase kinase/ kinase/ protein binding )
24 Proteins interacs with AT4G26070Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G01370 | Experimentaltwo hybridprotein kinase assayprotein complementation assaysplit-reporter assaytwo hybrid | FSW = 0.0718
| Unknown | ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE |
AT1G35160 | Experimentalpull down | FSW = 0.0257
| Unknown | GF14 PHI (GF14 PROTEIN PHI CHAIN) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT4G08500 | Experimentaltwo hybridtwo hybridcoimmunoprecipitationtwo hybridprotein complementation assaycoimmunoprecipitationsplit-reporter assay | FSW = 0.0320
| Unknown | MEKK1 (MAP KINASE KINASE KINASE 1) DNA BINDING / MAP KINASE KINASE KINASE/ KINASE/ KINASE BINDING / PROTEIN BINDING |
AT2G46070 | Experimentalprotein kinase assay | FSW = 0.0913
| Unknown | MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP KINASE/ KINASE |
AT1G01560 | Experimentalprotein kinase assay | FSW = 0.1576
| Unknown | ATMPK11 MAP KINASE/ KINASE |
AT4G37930 | PredictedAffinity Capture-MS | FSW = 0.0228
| Unknown | SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1) GLYCINE HYDROXYMETHYLTRANSFERASE/ POLY(U) BINDING |
AT4G29810 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.3350
| Unknown | ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2) MAP KINASE KINASE/ KINASE |
AT1G10900 | Predictedinterologs mapping | FSW = 0.0228
| Unknown | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN |
AT2G19480 | PredictedAffinity Capture-MS | FSW = 0.0280
| Unknown | NAP12 (NUCLEOSOME ASSEMBLY PROTEIN 12) DNA BINDING |
AT1G24180 | PredictedAffinity Capture-MS | FSW = 0.0247
| Unknown | IAR4 OXIDOREDUCTASE ACTING ON THE ALDEHYDE OR OXO GROUP OF DONORS DISULFIDE AS ACCEPTOR / PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) |
AT1G43900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0883
| Unknown | PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE |
AT5G02530 | PredictedAffinity Capture-MS | FSW = 0.0190
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT4G12600 | PredictedAffinity Capture-MS | FSW = 0.0476
| Unknown | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
AT2G43790 | Predictedin vivoin vivoin vitroin vitroAffinity Capture-Westernin vitroin vivoShared biological functionCo-expression | FSW = 0.1528
| Unknown | ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP KINASE/ KINASE |
AT5G17930 | Predictedinterologs mapping | FSW = 0.1254
| Unknown | BINDING / PROTEIN BINDING |
AT3G45640 | Predictedtwo hybridtwo hybridin vivoin vivoin vitroin vitroin vitroin vivotwo hybridShared biological functionCo-expression | FSW = 0.1408
| Unknown | ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3) MAP KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT4G08470 | Predictedin vitroin vivoCo-expression | FSW = 0.0298
| Unknown | MAPKKK10 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G66620 | Predictedin vitroin vivo | FSW = 0.1607
| Unknown | SEVEN IN ABSENTIA (SINA) PROTEIN PUTATIVE |
AT3G01090 | PredictedPhenotypic Enhancement | FSW = 0.0278
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT1G27320 | PredictedPhenotypic Suppression | FSW = 0.0347
| Unknown | AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE |
AT1G67070 | Predictedsynthetic growth defect | FSW = 0.0756
| Unknown | DIN9 (DARK INDUCIBLE 9) MANNOSE-6-PHOSPHATE ISOMERASE |
AT1G18350 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2294
| Unknown | ATMKK7 MAP KINASE KINASE/ KINASE |
AT3G06230 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1589
| Unknown | ATMKK8 MAP KINASE KINASE/ KINASE |
AT5G56580 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2118
| Unknown | MKK6 (MAP KINASE KINASE 6) MAP KINASE KINASE/ KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454