Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G26080 - ( ABI1 (ABA INSENSITIVE 1) calcium ion binding / protein serine/threonine phosphatase )

31 Proteins interacs with AT4G26080
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G18960

Experimental

interaction detection method

FSW = 0.0294

Unknown

AHA1 (ARABIDOPSIS H+ ATPASE 1) ATPASE/ HYDROGEN-EXPORTING ATPASE PHOSPHORYLATIVE MECHANISM / PROTEIN BINDING
AT5G20280

Experimental

interaction detection method

Affinity Capture-MS

FSW = 0.1176

Unknown

ATSPS1F (SUCROSE PHOSPHATE SYNTHASE 1F) SUCROSE-PHOSPHATE SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT2G20580

Experimental

interaction detection method

Affinity Capture-MS

FSW = 0.0092

Unknown

RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR
AT2G38440

Experimental

two hybrid

FSW = 0.0294

Unknown

SCAR2 (SCAR HOMOLOG 2)
AT3G53430

Experimental

interaction detection method

Affinity Capture-MS

FSW = 0.0147

Unknown

60S RIBOSOMAL PROTEIN L12 (RPL12B)
AT2G22430

Experimental

two hybrid

Reconstituted Complex

FSW = 0.0250

Unknown

ATHB6 DNA BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR
AT5G53160

Experimental

interaction detection method

two hybrid

protein complementation assay

Affinity Capture-MS

FSW = 0.1286

Unknown

UNKNOWN PROTEIN
AT2G37630

Experimental

pull down

FSW = 0.0269

Unknown

AS1 (ASYMMETRIC LEAVES 1) DNA BINDING / PROTEIN HOMODIMERIZATION/ TRANSCRIPTION FACTOR
AT2G33610

Experimental

FSW = 0.0138

Unknown

ATSWI3B (SWITCH SUBUNIT 3) DNA BINDING
AT4G33950

Experimental

two hybrid

FSW = 0.0166

Unknown

OST1 (OPEN STOMATA 1) CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE KINASE/ KINASE/ PROTEIN KINASE
AT1G01360

Experimental

Affinity Capture-MS

FSW = 0.0672

Unknown

UNKNOWN PROTEIN
AT4G17870

Experimental

pull down

interaction detection method

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.1185

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S STREPTOMYCES CYCLASE/DEHYDRASE (INTERPROIPR005031) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G467901) HAS 177 BLAST HITS TO 177 PROTEINS IN 18 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 0 FUNGI - 0 PLANTS - 177 VIRUSES - 0 OTHER EUKARYOTES - 0 (SOURCE NCBI BLINK)
AT2G38310

Experimental

Affinity Capture-MS

FSW = 0.0523

Unknown

UNKNOWN PROTEIN
AT3G50500

Experimental

FSW = 0.0880

Unknown

SNRK22 (SNF1-RELATED PROTEIN KINASE 22) KINASE/ PROTEIN KINASE
AT1G01480

Experimental

FSW = 0.0627

Unknown

ACS2 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE
AT4G11280

Experimental

FSW = 0.0571

Unknown

ACS6 (1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID (ACC) SYNTHASE 6) 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE
AT4G38630

Experimental

interaction detection method

FSW = 0.0050

Unknown

RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT4G27920

Experimental

interaction detection method

Affinity Capture-MS

FSW = 0.0941

Unknown

UNKNOWN PROTEIN
AT3G19390

Experimental

interaction detection method

Affinity Capture-MS

FSW = 0.0672

Unknown

CYSTEINE PROTEINASE PUTATIVE / THIOL PROTEASE PUTATIVE
AT5G46790

Experimental

interaction detection method

Affinity Capture-MS

FSW = 0.0784

Unknown

UNKNOWN PROTEIN
AT5G66880

Experimental

interaction detection method

FSW = 0.0539

Unknown

SNRK23 (SUCROSE NONFERMENTING 1(SNF1)-RELATED PROTEIN KINASE 23) KINASE/ PROTEIN KINASE
AT4G01026

Experimental

Affinity Capture-MS

FSW = 0.1469

Unknown

UNKNOWN PROTEIN
AT2G40330

Experimental

interaction detection method

Affinity Capture-MS

FSW = 0.0784

Unknown

BET V I ALLERGEN FAMILY PROTEIN
AT5G05440

Experimental

Affinity Capture-MS

FSW = 0.0784

Unknown

UNKNOWN PROTEIN
AT3G25230

Experimental

FSW = 0.0094

Unknown

ROF1 (ROTAMASE FKBP 1) FK506 BINDING / CALMODULIN BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT5G01810

Experimental

two hybrid

Reconstituted Complex

FSW = 0.0269

Unknown

CIPK15 (CBL-INTERACTING PROTEIN KINASE 15) KINASE/ PROTEIN KINASE
AT5G35410

Experimental

Reconstituted Complex

FSW = 0.0127

Unknown

SOS2 (SALT OVERLY SENSITIVE 2) KINASE/ PROTEIN KINASE
AT5G45820

Experimental

two hybrid

FSW = 0.0282

Unknown

CIPK20 (CBL-INTERACTING PROTEIN KINASE 20) KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G43350

Experimental

two hybrid

Reconstituted Complex

FSW = 0.0262

Unknown

ATGPX3 (GLUTATHIONE PEROXIDASE 3) GLUTATHIONE PEROXIDASE
AT5G08710

Predicted

Gene fusion method

FSW = 0.0791

Unknown

REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN / UVB-RESISTANCE PROTEIN-RELATED
AT3G16710

Predicted

Gene fusion method

FSW = 0.0627

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 10 PLANT STRUCTURES EXPRESSED DURING LP10 TEN LEAVES VISIBLE PETAL DIFFERENTIATION AND EXPANSION STAGE D BILATERAL STAGE E EXPANDED COTYLEDON STAGE CONTAINS INTERPRO DOMAIN/S PENTATRICOPEPTIDE REPEAT (INTERPROIPR002885) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN (TAIRAT5G411701) HAS 25882 BLAST HITS TO 6002 PROTEINS IN 187 SPECIES ARCHAE - 3 BACTERIA - 22 METAZOA - 744 FUNGI - 522 PLANTS - 23419 VIRUSES - 0 OTHER EUKARYOTES - 1172 (SOURCE NCBI BLINK)

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454