Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G26270 - ( PFK3 (PHOSPHOFRUCTOKINASE 3) 6-phosphofructokinase )
19 Proteins interacs with AT4G26270Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G66410 | Experimentalprotein array | FSW = 0.0278
| Unknown | CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER |
AT3G51920 | Experimentalprotein array | FSW = 0.0276
| Unknown | CAM9 (CALMODULIN 9) CALCIUM ION BINDING |
AT5G21274 | Experimentalprotein array | FSW = 0.0255
| Unknown | CAM6 (CALMODULIN 6) CALCIUM ION BINDING |
AT2G21170 | Predictedpull down | FSW = 0.0681
| Unknown | TIM (TRIOSEPHOSPHATE ISOMERASE) CATALYTIC/ TRIOSE-PHOSPHATE ISOMERASE |
AT4G33760 | Predictedpull down | FSW = 0.0455
| Unknown | TRNA SYNTHETASE CLASS II (D K AND N) FAMILY PROTEIN |
AT4G24830 | Predictedpull down | FSW = 0.2424
| Unknown | ARGINOSUCCINATE SYNTHASE FAMILY |
AT4G35310 | PredictedAffinity Capture-MS | FSW = 0.0145
| Unknown | CPK5 (CALMODULIN-DOMAIN PROTEIN KINASE 5) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G15550 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0096
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G01310 | Predictedsynthetic growth defect | FSW = 0.0870
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G30320 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.0482
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G03140 | Predictedpull down | FSW = 0.0191
| Unknown | BINDING / CATALYTIC/ OXIDOREDUCTASE |
AT5G20990 | Predictedpull down | FSW = 0.0863
| Unknown | B73 MOLYBDENUM ION BINDING |
AT3G53620 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1739
| Unknown | ATPPA4 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 4) INORGANIC DIPHOSPHATASE |
AT5G03850 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0410
| Unknown | 40S RIBOSOMAL PROTEIN S28 (RPS28B) |
AT4G32840 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1905
| Unknown | PFK6 (PHOSPHOFRUCTOKINASE 6) 6-PHOSPHOFRUCTOKINASE |
AT5G56630 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4000
| Unknown | PFK7 (PHOSPHOFRUCTOKINASE 7) 6-PHOSPHOFRUCTOKINASE |
AT5G47810 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5079
| Unknown | PFK2 (PHOSPHOFRUCTOKINASE 2) 6-PHOSPHOFRUCTOKINASE |
AT2G22480 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0373
| Unknown | PFK5 (PHOSPHOFRUCTOKINASE 5) 6-PHOSPHOFRUCTOKINASE |
AT4G29220 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3636
| Unknown | PFK1 (PHOSPHOFRUCTOKINASE 1) 6-PHOSPHOFRUCTOKINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454