Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G26390 - ( pyruvate kinase putative )

16 Proteins interacs with AT4G26390
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G25960

Predicted

Enriched domain pair

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.8667

Class C:

plasma membrane

cytosol

PYRUVATE KINASE PUTATIVE
AT5G56350

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.5763

Class C:

plasma membrane

cytosol

PYRUVATE KINASE PUTATIVE
AT3G04050

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.3953

Class C:

plasma membrane

cytosol

PYRUVATE KINASE PUTATIVE
AT3G55810

Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.3577

Class C:

plasma membrane

cytosol

PYRUVATE KINASE PUTATIVE
AT3G55650

Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.8667

Class C:

plasma membrane

cytosol

PYRUVATE KINASE PUTATIVE
AT3G52990

Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.8048

Class C:

plasma membrane

cytosol

PYRUVATE KINASE PUTATIVE
AT5G63680

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.3219

Class C:

plasma membrane

cytosol

PYRUVATE KINASE PUTATIVE
AT2G36580

Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.8346

Class C:

plasma membrane

cytosol

PYRUVATE KINASE PUTATIVE
AT5G08570

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.4599

Class C:

plasma membrane

cytosol

PYRUVATE KINASE PUTATIVE
AT5G46630

Predicted

two hybrid

FSW = 0.0818

Class C:

plasma membrane

CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN
AT1G44170

Predicted

two hybrid

FSW = 0.0500

Unknown

ALDH3H1 (ALDEHYDE DEHYDROGENASE 3H1) 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ ALDEHYDE DEHYDROGENASE (NAD)
AT5G20020

Predicted

two hybrid

FSW = 0.0265

Unknown

RAN2 GTP BINDING / GTPASE/ PROTEIN BINDING
AT3G22960

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.8346

Unknown

PKP-ALPHA PYRUVATE KINASE
AT5G52920

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.8667

Unknown

PKP-BETA1 (PLASTIDIC PYRUVATE KINASE BETA SUBUNIT 1) PYRUVATE KINASE
AT1G32440

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.8667

Unknown

PKP3 (PLASTIDIAL PYRUVATE KINASE 3) PYRUVATE KINASE
AT5G36160

Predicted

two hybrid

FSW = 0.0947

Unknown

AMINOTRANSFERASE-RELATED

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Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454