Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G26550 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 22 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s SFT2-like (InterProIPR011691) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT5G560201) Has 452 Blast hits to 452 proteins in 136 species Archae - 0 Bacteria - 0 Metazoa - 198 Fungi - 89 Plants - 61 Viruses - 0 Other Eukaryotes - 104 (source NCBI BLink) )
20 Proteins interacs with AT4G26550Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G44610 | Predictedinteraction prediction | FSW = 0.0817
| Unknown | RAB6A GTP BINDING / PROTEIN BINDING |
AT1G31780 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.2214
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT2G45200 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.2688
| Unknown | GOS12 (GOLGI SNARE 12) SNARE BINDING |
AT5G46860 | Predictedtwo hybridinterologs mappinginteraction prediction | FSW = 0.0855
| Unknown | VAM3 SNAP RECEPTOR |
AT5G23630 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.1000
| Unknown | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT1G07670 | PredictedPhenotypic Suppression | FSW = 0.0680
| Unknown | CALCIUM-TRANSPORTING ATPASE |
AT2G22290 | PredictedSynthetic Lethality | FSW = 0.1016
| Unknown | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING |
AT3G24350 | PredictedSynthetic Lethalityinterologs mappinginteraction prediction | FSW = 0.1549
| Unknown | SYP32 (SYNTAXIN OF PLANTS 32) SNAP RECEPTOR |
AT1G55130 | Predictedtwo hybridinteraction prediction | FSW = 0.2500
| Unknown | ENDOMEMBRANE PROTEIN 70 PUTATIVE |
AT1G10130 | Predictedinterologs mapping | FSW = 0.0556
| Unknown | ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE |
AT3G05710 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.2185
| Unknown | SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR |
AT1G05785 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.0557
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT1G79990 | PredictedPhenotypic Enhancement | FSW = 0.1161
| Unknown | LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK) |
AT2G34770 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0939
| Unknown | FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT3G22480 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0101
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT5G10260 | PredictedSynthetic Lethality | FSW = 0.0697
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT3G03180 | Predictedinterologs mappingSynthetic Lethality | FSW = 0.1024
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT1G52360 | Predictedinterologs mapping | FSW = 0.1301
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE |
AT1G32270 | Predictedtwo hybrid | FSW = 0.0914
| Unknown | ATSYP24 SNAP RECEPTOR/ PROTEIN BINDING |
AT5G56020 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1739
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 14 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SFT2-LIKE (INTERPROIPR011691) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G265501) HAS 436 BLAST HITS TO 436 PROTEINS IN 135 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 188 FUNGI - 87 PLANTS - 61 VIRUSES - 0 OTHER EUKARYOTES - 100 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454