Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G26550 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 22 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s SFT2-like (InterProIPR011691) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT5G560201) Has 452 Blast hits to 452 proteins in 136 species Archae - 0 Bacteria - 0 Metazoa - 198 Fungi - 89 Plants - 61 Viruses - 0 Other Eukaryotes - 104 (source NCBI BLink) )

20 Proteins interacs with AT4G26550
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G44610

Predicted

interaction prediction

FSW = 0.0817

Unknown

RAB6A GTP BINDING / PROTEIN BINDING
AT1G31780

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.2214

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK)
AT2G45200

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.2688

Unknown

GOS12 (GOLGI SNARE 12) SNARE BINDING
AT5G46860

Predicted

two hybrid

interologs mapping

interaction prediction

FSW = 0.0855

Unknown

VAM3 SNAP RECEPTOR
AT5G23630

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.1000

Unknown

ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN
AT1G07670

Predicted

Phenotypic Suppression

FSW = 0.0680

Unknown

CALCIUM-TRANSPORTING ATPASE
AT2G22290

Predicted

Synthetic Lethality

FSW = 0.1016

Unknown

ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING
AT3G24350

Predicted

Synthetic Lethality

interologs mapping

interaction prediction

FSW = 0.1549

Unknown

SYP32 (SYNTAXIN OF PLANTS 32) SNAP RECEPTOR
AT1G55130

Predicted

two hybrid

interaction prediction

FSW = 0.2500

Unknown

ENDOMEMBRANE PROTEIN 70 PUTATIVE
AT1G10130

Predicted

interologs mapping

FSW = 0.0556

Unknown

ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE
AT3G05710

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.2185

Unknown

SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR
AT1G05785

Predicted

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.0557

Unknown

GOT1-LIKE FAMILY PROTEIN
AT1G79990

Predicted

Phenotypic Enhancement

FSW = 0.1161

Unknown

LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK)
AT2G34770

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0939

Unknown

FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE
AT3G22480

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0101

Unknown

PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT5G10260

Predicted

Synthetic Lethality

FSW = 0.0697

Unknown

ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT3G03180

Predicted

interologs mapping

Synthetic Lethality

FSW = 0.1024

Unknown

GOT1-LIKE FAMILY PROTEIN
AT1G52360

Predicted

interologs mapping

FSW = 0.1301

Unknown

COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE
AT1G32270

Predicted

two hybrid

FSW = 0.0914

Unknown

ATSYP24 SNAP RECEPTOR/ PROTEIN BINDING
AT5G56020

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1739

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 14 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SFT2-LIKE (INTERPROIPR011691) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G265501) HAS 436 BLAST HITS TO 436 PROTEINS IN 135 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 188 FUNGI - 87 PLANTS - 61 VIRUSES - 0 OTHER EUKARYOTES - 100 (SOURCE NCBI BLINK)

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454