Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G26570 - ( ATCBL3 (ARABIDOPSIS THALIANA CALCINEURIN B-LIKE 3) calcium ion binding )

26 Proteins interacs with AT4G26570
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G01820

Experimental

two hybrid

protein complementation assay

FSW = 0.1364

Class A:

vacuole

Class D:

cytosol (p = 0.67)

ATSR1 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G30270

Experimental

two hybrid

FSW = 0.0794

Class B:

vacuole

unclear

Class D:

mitochondrion (p = 0.82)

CIPK23 (CBL-INTERACTING PROTEIN KINASE 23) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE
AT4G17615

Experimental

FSW = 0.6679

Class B:

vacuole

plasma membrane

Class D:

extracellular (p = 0.86)

cytosol (p = 0.67)

CBL1 (CALCINEURIN B-LIKE PROTEIN 1) CALCIUM ION BINDING
AT4G38800

Experimental

two hybrid

Reconstituted Complex

protein complementation assay

split-reporter assay

in vitro

FSW = 0.0275

Class B:

vacuole

plasma membrane

Class D:

cytosol (p = 0.67)

ATMTN1 CATALYTIC/ METHYLTHIOADENOSINE NUCLEOSIDASE
AT2G26980

Experimental

two hybrid

FSW = 0.1838

Class B:

vacuole

nucleus

cytosol

Class D:

mitochondrion (p = 0.82)

cytosol (p = 0.67)

CIPK3 (CBL-INTERACTING PROTEIN KINASE 3) KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G24270

Experimental

FSW = 0.4333

Class D:

mitochondrion (p = 0.82)

cytosol (p = 0.67)

SOS3 (SALT OVERLY SENSITIVE 3) CALCIUM ION BINDING / CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G17510

Experimental

two hybrid

two hybrid

FSW = 0.2424

Unknown

CIPK1 (CBL-INTERACTING PROTEIN KINASE 1) KINASE/ PROTEIN BINDING
AT5G07070

Experimental

two hybrid

two hybrid

FSW = 0.1250

Unknown

CIPK2 (CBL-INTERACTING PROTEIN KINASE 2) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G10930

Experimental

two hybrid

FSW = 0.0860

Unknown

CIPK5 (CBL-INTERACTING PROTEIN KINASE 5) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G30960

Experimental

two hybrid

two hybrid

FSW = 0.1983

Unknown

SIP3 (SOS3-INTERACTING PROTEIN 3) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G29230

Experimental

two hybrid

FSW = 0.0794

Unknown

CIPK18 (CBL-INTERACTING PROTEIN KINASE 18) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G34180

Experimental

two hybrid

two hybrid

FSW = 0.0283

Unknown

CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G25090

Experimental

FSW = 0.1078

Unknown

CIPK16 (CBL-INTERACTING PROTEIN KINASE 16) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G35410

Experimental

two hybrid

FSW = 0.0781

Unknown

SOS2 (SALT OVERLY SENSITIVE 2) KINASE/ PROTEIN KINASE
AT3G23000

Experimental

two hybrid

two hybrid

FSW = 0.2297

Unknown

CIPK7 (CBL-INTERACTING PROTEIN KINASE 7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G14580

Experimental

two hybrid

FSW = 0.2604

Unknown

CIPK4 (CBL-INTERACTING PROTEIN KINASE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G18700

Experimental

two hybrid

FSW = 0.2841

Unknown

CIPK12 (CBL-INTERACTING PROTEIN KINASE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G01140

Experimental

two hybrid

FSW = 0.2506

Unknown

CIPK9 (CBL-INTERACTING PROTEIN KINASE 9) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G30360

Experimental

FSW = 0.1897

Unknown

SIP4 (SOS3-INTERACTING PROTEIN 4) KINASE/ PROTEIN KINASE
AT5G04190

Experimental

two hybrid

FSW = 0.2000

Unknown

PKS4 (PHYTOCHROME KINASE SUBSTRATE 4)
AT5G55990

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.6914

Class C:

vacuole

CBL2 (CALCINEURIN B-LIKE 2) CALCIUM ION BINDING
AT4G24770

Predicted

two hybrid

FSW = 0.0502

Unknown

RBP31 (31-KDA RNA BINDING PROTEIN) RNA BINDING / POLY(U) BINDING
AT2G32590

Predicted

two hybrid

FSW = 0.0368

Unknown

INVOLVED IN MITOSIS MITOTIC CELL CYCLE LOCATED IN NUCLEUS CHLOROPLAST EXPRESSED IN 17 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BARREN (INTERPROIPR008418) HAS 340 BLAST HITS TO 330 PROTEINS IN 142 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 135 FUNGI - 102 PLANTS - 21 VIRUSES - 1 OTHER EUKARYOTES - 81 (SOURCE NCBI BLINK)
AT1G10490

Predicted

two hybrid

FSW = 0.0054

Unknown

UNKNOWN PROTEIN
AT4G16350

Predicted

Gene fusion method

Co-expression

FSW = 0.3126

Unknown

CBL6 (CALCINEURIN B-LIKE PROTEIN 6) CALCIUM ION BINDING
AT1G55060

Predicted

Gene fusion method

FSW = 0.0102

Unknown

UBQ12 (UBIQUITIN 12) PROTEIN BINDING

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454