Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G26570 - ( ATCBL3 (ARABIDOPSIS THALIANA CALCINEURIN B-LIKE 3) calcium ion binding )
26 Proteins interacs with AT4G26570Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G01820 | Experimentaltwo hybridprotein complementation assay | FSW = 0.1364
| Class A:vacuoleClass D:cytosol (p = 0.67) | ATSR1 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G30270 | Experimentaltwo hybrid | FSW = 0.0794
| Class B:vacuoleunclearClass D:mitochondrion (p = 0.82) | CIPK23 (CBL-INTERACTING PROTEIN KINASE 23) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE |
AT4G17615 | Experimental | FSW = 0.6679
| Class B:vacuoleplasma membraneClass D:extracellular (p = 0.86)cytosol (p = 0.67) | CBL1 (CALCINEURIN B-LIKE PROTEIN 1) CALCIUM ION BINDING |
AT4G38800 | Experimentaltwo hybridReconstituted Complexprotein complementation assaysplit-reporter assayin vitro | FSW = 0.0275
| Class B:vacuoleplasma membraneClass D:cytosol (p = 0.67) | ATMTN1 CATALYTIC/ METHYLTHIOADENOSINE NUCLEOSIDASE |
AT2G26980 | Experimentaltwo hybrid | FSW = 0.1838
| Class B:vacuolenucleuscytosolClass D:mitochondrion (p = 0.82)cytosol (p = 0.67) | CIPK3 (CBL-INTERACTING PROTEIN KINASE 3) KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G24270 | Experimental | FSW = 0.4333
| Class D:mitochondrion (p = 0.82)cytosol (p = 0.67) | SOS3 (SALT OVERLY SENSITIVE 3) CALCIUM ION BINDING / CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G17510 | Experimentaltwo hybridtwo hybrid | FSW = 0.2424
| Unknown | CIPK1 (CBL-INTERACTING PROTEIN KINASE 1) KINASE/ PROTEIN BINDING |
AT5G07070 | Experimentaltwo hybridtwo hybrid | FSW = 0.1250
| Unknown | CIPK2 (CBL-INTERACTING PROTEIN KINASE 2) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G10930 | Experimentaltwo hybrid | FSW = 0.0860
| Unknown | CIPK5 (CBL-INTERACTING PROTEIN KINASE 5) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G30960 | Experimentaltwo hybridtwo hybrid | FSW = 0.1983
| Unknown | SIP3 (SOS3-INTERACTING PROTEIN 3) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G29230 | Experimentaltwo hybrid | FSW = 0.0794
| Unknown | CIPK18 (CBL-INTERACTING PROTEIN KINASE 18) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G34180 | Experimentaltwo hybridtwo hybrid | FSW = 0.0283
| Unknown | CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G25090 | Experimental | FSW = 0.1078
| Unknown | CIPK16 (CBL-INTERACTING PROTEIN KINASE 16) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G35410 | Experimentaltwo hybrid | FSW = 0.0781
| Unknown | SOS2 (SALT OVERLY SENSITIVE 2) KINASE/ PROTEIN KINASE |
AT3G23000 | Experimentaltwo hybridtwo hybrid | FSW = 0.2297
| Unknown | CIPK7 (CBL-INTERACTING PROTEIN KINASE 7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G14580 | Experimentaltwo hybrid | FSW = 0.2604
| Unknown | CIPK4 (CBL-INTERACTING PROTEIN KINASE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G18700 | Experimentaltwo hybrid | FSW = 0.2841
| Unknown | CIPK12 (CBL-INTERACTING PROTEIN KINASE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G01140 | Experimentaltwo hybrid | FSW = 0.2506
| Unknown | CIPK9 (CBL-INTERACTING PROTEIN KINASE 9) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G30360 | Experimental | FSW = 0.1897
| Unknown | SIP4 (SOS3-INTERACTING PROTEIN 4) KINASE/ PROTEIN KINASE |
AT5G04190 | Experimentaltwo hybrid | FSW = 0.2000
| Unknown | PKS4 (PHYTOCHROME KINASE SUBSTRATE 4) |
AT5G55990 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.6914
| Class C:vacuole | CBL2 (CALCINEURIN B-LIKE 2) CALCIUM ION BINDING |
AT4G24770 | Predictedtwo hybrid | FSW = 0.0502
| Unknown | RBP31 (31-KDA RNA BINDING PROTEIN) RNA BINDING / POLY(U) BINDING |
AT2G32590 | Predictedtwo hybrid | FSW = 0.0368
| Unknown | INVOLVED IN MITOSIS MITOTIC CELL CYCLE LOCATED IN NUCLEUS CHLOROPLAST EXPRESSED IN 17 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BARREN (INTERPROIPR008418) HAS 340 BLAST HITS TO 330 PROTEINS IN 142 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 135 FUNGI - 102 PLANTS - 21 VIRUSES - 1 OTHER EUKARYOTES - 81 (SOURCE NCBI BLINK) |
AT1G10490 | Predictedtwo hybrid | FSW = 0.0054
| Unknown | UNKNOWN PROTEIN |
AT4G16350 | PredictedGene fusion methodCo-expression | FSW = 0.3126
| Unknown | CBL6 (CALCINEURIN B-LIKE PROTEIN 6) CALCIUM ION BINDING |
AT1G55060 | PredictedGene fusion method | FSW = 0.0102
| Unknown | UBQ12 (UBIQUITIN 12) PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454