Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G26780 - ( AR192 adenyl-nucleotide exchange factor/ chaperone binding / protein binding / protein homodimerization )
39 Proteins interacs with AT4G26780Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G33210 | Predictedpull down | FSW = 0.0497
| Unknown | HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING |
AT5G09590 | Predictedinteraction predictionAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexCo-purificationinterologs mappingAffinity Capture-MSinterologs mapping | FSW = 0.0228
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT4G37910 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westernpull downAffinity Capture-WesternCo-purificationinterologs mappingReconstituted Complex | FSW = 0.1814
| Unknown | MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING |
AT2G33800 | Predictedpull down | FSW = 0.1078
| Unknown | RIBOSOMAL PROTEIN S5 FAMILY PROTEIN |
AT5G13030 | Predictedtwo hybrid | FSW = 0.0473
| Unknown | UNKNOWN PROTEIN |
AT3G27850 | Predictedpull down | FSW = 0.0316
| Unknown | RPL12-C (RIBOSOMAL PROTEIN L12-C) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G39960 | PredictedAffinity Capture-Western | FSW = 0.0861
| Unknown | DNAJ HEAT SHOCK FAMILY PROTEIN |
AT2G22360 | Predictedinteraction prediction | FSW = 0.1978
| Unknown | DNAJ HEAT SHOCK FAMILY PROTEIN |
AT1G80030 | PredictedAffinity Capture-Western | FSW = 0.0158
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT1G17220 | Predictedpull down | FSW = 0.1604
| Unknown | FUG1 (FU-GAERI1) TRANSLATION INITIATION FACTOR |
AT5G15450 | Predictedpull down | FSW = 0.0506
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G24240 | Predictedpull down | FSW = 0.0505
| Unknown | RIBOSOMAL PROTEIN L19 FAMILY PROTEIN |
ATCG00160 | Predictedpull down | FSW = 0.1161
| Unknown | CHLOROPLAST RIBOSOMAL PROTEIN S2 |
ATCG00780 | Predictedpull down | FSW = 0.0693
| Unknown | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L14 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX |
ATCG01240 | Predictedpull down | FSW = 0.0976
| Unknown | 30S CHLOROPLAST RIBOSOMAL PROTEIN S7 |
AT2G36880 | Predictedpull down | FSW = 0.1069
| Unknown | MAT3 (METHIONINE ADENOSYLTRANSFERASE 3) COPPER ION BINDING / METHIONINE ADENOSYLTRANSFERASE |
AT5G57015 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0147
| Unknown | CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G03930 | PredictedAffinity Capture-MS | FSW = 0.0115
| Unknown | ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT3G21700 | Predictedtwo hybrid | FSW = 0.0109
| Unknown | SGP2 GTP BINDING |
AT3G09210 | Predictedpull down | FSW = 0.1404
| Unknown | PTAC13 (PLASTID TRANSCRIPTIONALLY ACTIVE13) TRANSCRIPTION ELONGATION REGULATOR |
AT5G54840 | Predictedinteraction prediction | FSW = 0.0131
| Unknown | SGP1 GTP BINDING |
AT3G19210 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0041
| Unknown | ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT4G02930 | Predictedpull down | FSW = 0.1402
| Unknown | ELONGATION FACTOR TU PUTATIVE / EF-TU PUTATIVE |
AT5G26860 | Predictedpull down | FSW = 0.1026
| Unknown | LON1 (LON PROTEASE 1) ATP BINDING / ATP-DEPENDENT PEPTIDASE/ SERINE-TYPE PEPTIDASE |
AT2G20510 | PredictedReconstituted ComplexCo-purificationAffinity Capture-Westerninterologs mappinginteraction prediction | FSW = 0.0427
| Unknown | ATTIM44-1 PROTEIN-TRANSMEMBRANE TRANSPORTING ATPASE |
AT1G17530 | PredictedCo-purification | FSW = 0.1043
| Unknown | ATTIM23-1 (TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 23) P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER |
AT1G80830 | Predictedpull down | FSW = 0.0212
| Unknown | NRAMP1 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 1) INORGANIC ANION TRANSMEMBRANE TRANSPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ METAL ION TRANSMEMBRANE TRANSPORTER |
AT5G53350 | Predictedpull down | FSW = 0.2222
| Unknown | CLPX ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT2G20060 | Predictedpull down | FSW = 0.0909
| Unknown | RIBOSOMAL PROTEIN L4 FAMILY PROTEIN |
AT3G17760 | Predictedpull down | FSW = 0.1039
| Unknown | GAD5 (GLUTAMATE DECARBOXYLASE 5) CALMODULIN BINDING |
AT3G49080 | Predictedpull down | FSW = 0.0497
| Unknown | RIBOSOMAL PROTEIN S9 FAMILY PROTEIN |
AT5G23230 | Predictedpull down | FSW = 0.1813
| Unknown | NIC2 (NICOTINAMIDASE 2) CATALYTIC/ NICOTINAMIDASE |
AT5G64650 | Predictedpull down | FSW = 0.0642
| Unknown | RIBOSOMAL PROTEIN L17 FAMILY PROTEIN |
AT5G64670 | Predictedpull down | FSW = 0.0370
| Unknown | RIBOSOMAL PROTEIN L15 FAMILY PROTEIN |
AT2G31305 | PredictedAffinity Capture-MS | FSW = 0.0346
| Unknown | INH3 (INHIBITOR-3) |
AT3G62240 | PredictedAffinity Capture-MS | FSW = 0.0381
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
AT4G09140 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0316
| Unknown | MLH1 (MUTL-HOMOLOGUE 1) PROTEIN BINDING BRIDGING |
AT5G16270 | PredictedCo-purification | FSW = 0.0123
| Unknown | SYN4 (SISTER CHROMATID COHESION 1 PROTEIN 4) |
AT1G54650 | Predictedtwo hybridinteraction prediction | FSW = 0.0423
| Unknown | METHYLTRANSFERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454