Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G26910 - ( 2-oxoacid dehydrogenase family protein )
49 Proteins interacs with AT4G26910Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G55070 | PredictedGene fusion methodPhylogenetic profile method | FSW = 0.1118
| Class C:mitochondrion | 2-OXOACID DEHYDROGENASE FAMILY PROTEIN |
AT4G33650 | PredictedAffinity Capture-MS | FSW = 0.0175
| Class C:mitochondrion | DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING |
AT5G03290 | PredictedPhenotypic Suppression | FSW = 0.0764
| Class C:mitochondrion | ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE |
AT1G48030 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0494
| Class C:mitochondrion | MTLPD1 (MITOCHONDRIAL LIPOAMIDE DEHYDROGENASE 1) ATP BINDING / DIHYDROLIPOYL DEHYDROGENASE |
AT3G55410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2299
| Class C:mitochondrion | 2-OXOGLUTARATE DEHYDROGENASE E1 COMPONENT PUTATIVE / OXOGLUTARATE DECARBOXYLASE PUTATIVE / ALPHA-KETOGLUTARIC DEHYDROGENASE PUTATIVE |
AT3G06850 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0193
| Class C:mitochondrion | BCE2 ACETYLTRANSFERASE/ ALPHA-KETOACID DEHYDROGENASE/ DIHYDROLIPOAMIDE BRANCHED CHAIN ACYLTRANSFERASE |
AT3G09810 | PredictedPhenotypic SuppressionCo-expression | FSW = 0.0981
| Class C:mitochondrion | ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE |
AT5G65750 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappinginteraction prediction | FSW = 0.1525
| Class C:mitochondrion | 2-OXOGLUTARATE DEHYDROGENASE E1 COMPONENT PUTATIVE / OXOGLUTARATE DECARBOXYLASE PUTATIVE / ALPHA-KETOGLUTARIC DEHYDROGENASE PUTATIVE |
AT3G53940 | PredictedGene fusion method | FSW = 0.0406
| Class C:mitochondrion | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT2G01250 | PredictedAffinity Capture-MS | FSW = 0.0255
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0184
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G01410 | PredictedSynthetic RescueSynthetic RescuePhenotypic Enhancement | FSW = 0.0136
| Unknown | RSR4 (REDUCED SUGAR RESPONSE 4) PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION |
AT3G52140 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0072
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT3G20820 | PredictedGene fusion method | FSW = 0.0399
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
AT5G40610 | PredictedSynthetic Lethality | FSW = 0.1000
| Unknown | GLYCEROL-3-PHOSPHATE DEHYDROGENASE (NAD+) / GPDH |
AT3G13580 | PredictedAffinity Capture-MS | FSW = 0.0224
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7D) |
AT1G75840 | PredictedAffinity Capture-MS | FSW = 0.0201
| Unknown | ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5) GTP BINDING / GTPASE |
AT3G04050 | PredictedAffinity Capture-MS | FSW = 0.0514
| Unknown | PYRUVATE KINASE PUTATIVE |
AT5G63680 | PredictedAffinity Capture-MS | FSW = 0.0408
| Unknown | PYRUVATE KINASE PUTATIVE |
AT4G38600 | Predictedtwo hybrid | FSW = 0.0252
| Unknown | KAK (KAKTUS) UBIQUITIN-PROTEIN LIGASE |
AT5G03860 | PredictedPhenotypic EnhancementSynthetic Rescue | FSW = 0.0658
| Unknown | MLS (MALATE SYNTHASE) MALATE SYNTHASE |
AT1G02670 | Predictedtwo hybrid | FSW = 0.0308
| Unknown | DNA REPAIR PROTEIN PUTATIVE |
AT4G20440 | PredictedPhenotypic EnhancementSynthetic LethalityPhenotypic EnhancementPhenotypic EnhancementSynthetic LethalityPhenotypic Enhancement | FSW = 0.1896
| Unknown | SMB (SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B) |
AT3G06720 | Predictedinteraction prediction | FSW = 0.0327
| Unknown | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
AT4G26840 | Predictedtwo hybridinteraction prediction | FSW = 0.0303
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT1G07820 | PredictedSynthetic Lethality | FSW = 0.0404
| Unknown | HISTONE H4 |
AT1G10210 | PredictedPhenotypic Enhancement | FSW = 0.0179
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT1G69190 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.1185
| Unknown | 2-AMINO-4-HYDROXY-6-HYDROXYMETHYLDIHYDROPTERIDINE DIPHOSPHOKINASE/ DIHYDROPTEROATE SYNTHASE |
AT1G69710 | Predictedtwo hybrid | FSW = 0.1077
| Unknown | ZINC FINGER PROTEIN PUTATIVE / REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT2G19750 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.0515
| Unknown | 40S RIBOSOMAL PROTEIN S30 (RPS30A) |
AT3G18740 | PredictedAffinity Capture-MS | FSW = 0.0202
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30C) |
AT1G12130 | PredictedReconstituted Complex | FSW = 0.0151
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT1G33040 | PredictedPhenotypic Enhancement | FSW = 0.0224
| Unknown | NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5) |
AT1G59760 | PredictedAffinity Capture-MS | FSW = 0.0263
| Unknown | ATP-DEPENDENT RNA HELICASE PUTATIVE |
AT2G32170 | Predictedtwo hybrid | FSW = 0.0522
| Unknown | LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S N2227-LIKE (INTERPROIPR012901) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G321603) HAS 362 BLAST HITS TO 319 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 132 FUNGI - 130 PLANTS - 25 VIRUSES - 0 OTHER EUKARYOTES - 75 (SOURCE NCBI BLINK) |
AT2G32765 | PredictedPhenotypic Enhancement | FSW = 0.0206
| Unknown | SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5) PROTEIN TAG |
AT4G30530 | PredictedAffinity Capture-MS | FSW = 0.0690
| Unknown | DEFENSE-RELATED PROTEIN PUTATIVE |
AT5G02880 | Predictedinteraction predictiontwo hybridinterologs mapping | FSW = 0.0212
| Unknown | UPL4 UBIQUITIN-PROTEIN LIGASE |
AT5G16040 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0106
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT5G19820 | Predictedtwo hybridinteraction prediction | FSW = 0.0121
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT4G27640 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0430
| Unknown | IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN |
AT5G16170 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.0264
| Unknown | UNKNOWN PROTEIN |
AT1G29965 | PredictedAffinity Capture-MS | FSW = 0.0158
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AA) |
AT1G36240 | PredictedAffinity Capture-MS | FSW = 0.0282
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30A) |
AT2G32160 | Predictedtwo hybrid | FSW = 0.0537
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S N2227-LIKE (INTERPROIPR012901) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G321701) HAS 325 BLAST HITS TO 315 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 95 FUNGI - 130 PLANTS - 30 VIRUSES - 0 OTHER EUKARYOTES - 70 (SOURCE NCBI BLINK) |
AT1G02690 | Predictedtwo hybrid | FSW = 0.0353
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
AT2G17670 | PredictedGene fusion method | FSW = 0.0186
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT1G12970 | PredictedGene fusion method | FSW = 0.0690
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
AT4G05320 | PredictedGene fusion method | FSW = 0.0136
| Unknown | UBQ10 (POLYUBIQUITIN 10) PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454