Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G27000 - ( ATRBP45C RNA binding )

12 Proteins interacs with AT4G27000
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G01500

Predicted

Gene fusion method

FSW = 0.5556

Unknown

MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT2G28930

Predicted

Gene fusion method

FSW = 0.1062

Unknown

APK1B ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G28880

Predicted

Gene fusion method

FSW = 0.1875

Unknown

CKL3 (CASEIN KINASE I-LIKE 3) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G16820

Predicted

two hybrid

FSW = 0.0242

Unknown

HSF3 (HEAT SHOCK FACTOR 3) DNA BINDING / TRANSCRIPTION FACTOR
AT3G13920

Predicted

Gene fusion method

FSW = 0.0268

Unknown

EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR
AT5G47720

Predicted

Gene fusion method

FSW = 0.0331

Unknown

ACETYL-COA C-ACYLTRANSFERASE PUTATIVE / 3-KETOACYL-COA THIOLASE PUTATIVE
AT2G16780

Predicted

Gene fusion method

FSW = 0.2500

Unknown

MSI2 (MULTICOPY SUPPRESSOR OF IRA1 2)
AT5G42190

Predicted

two hybrid

FSW = 0.0058

Unknown

ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT4G29240

Predicted

Enriched domain pair

Gene fusion method

Co-expression

FSW = 0.8768

Unknown

LEUCINE-RICH REPEAT FAMILY PROTEIN / EXTENSIN FAMILY PROTEIN
AT1G71920

Predicted

Gene fusion method

FSW = 0.1113

Unknown

HISTIDINOL-PHOSPHATE AMINOTRANSFERASE PUTATIVE
AT1G24130

Predicted

Gene fusion method

FSW = 0.2297

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G43700

Predicted

Gene fusion method

FSW = 0.1015

Unknown

ATBPM6 (BTB-POZ AND MATH DOMAIN 6) PROTEIN BINDING

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454