Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G27070 - ( TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2) tryptophan synthase )
55 Proteins interacs with AT4G27070Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G36530 | Predictedbiochemical | FSW = 0.0241
| Unknown | LOS2 COPPER ION BINDING / PHOSPHOPYRUVATE HYDRATASE |
AT3G22630 | PredictedAffinity Capture-MS | FSW = 0.0032
| Unknown | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G12010 | PredictedAffinity Capture-MS | FSW = 0.0726
| Unknown | UNKNOWN PROTEIN |
AT4G21980 | PredictedPhenotypic Suppression | FSW = 0.0667
| Unknown | APG8A (AUTOPHAGY 8A) APG8 ACTIVATING ENZYME/ APG8-SPECIFIC PROTEASE/ ATG8 LIGASE |
AT5G09660 | PredictedAffinity Capture-MS | FSW = 0.0990
| Unknown | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
AT4G31210 | Predictedpull down | FSW = 0.0235
| Unknown | DNA TOPOISOMERASE FAMILY PROTEIN |
AT2G43030 | PredictedColocalizationColocalization | FSW = 0.0942
| Unknown | RIBOSOMAL PROTEIN L3 FAMILY PROTEIN |
AT5G28237 | PredictedPhylogenetic profile method | FSW = 0.1017
| Unknown | TRYPTOPHAN SYNTHASE BETA SUBUNIT PUTATIVE |
AT5G54810 | PredictedPhylogenetic profile method | FSW = 0.1830
| Unknown | TSB1 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 1) TRYPTOPHAN SYNTHASE |
AT3G54440 | Predictedpull down | FSW = 0.0115
| Unknown | GLYCOSIDE HYDROLASE FAMILY 2 PROTEIN |
AT5G63980 | PredictedAffinity Capture-MS | FSW = 0.0218
| Unknown | SAL1 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE |
AT4G36490 | PredictedAffinity Capture-MS | FSW = 0.1616
| Unknown | SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
AT1G04750 | PredictedPhenotypic Enhancement | FSW = 0.1144
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT1G13320 | PredictedAffinity Capture-MS | FSW = 0.0267
| Unknown | PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT1G70580 | PredictedAffinity Capture-MS | FSW = 0.0337
| Unknown | AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT5G54840 | PredictedAffinity Capture-MS | FSW = 0.0096
| Unknown | SGP1 GTP BINDING |
AT1G06960 | PredictedAffinity Capture-MS | FSW = 0.0541
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE |
AT3G57300 | PredictedAffinity Capture-Western | FSW = 0.0407
| Unknown | INO80 (INO80 ORTHOLOG) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT5G60980 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0918
| Unknown | NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G47630 | PredictedReconstituted ComplexbiochemicalSynthetic LethalityAffinity Capture-Western | FSW = 0.1093
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
AT3G20970 | PredictedAffinity Capture-MS | FSW = 0.1383
| Unknown | NFU4 STRUCTURAL MOLECULE |
AT4G39200 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1542
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT2G17800 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0692
| Unknown | ARAC1 GTP BINDING |
AT3G55630 | Predictedpull down | FSW = 0.0307
| Unknown | ATDFD (A THALIANA DHFS-FPGS HOMOLOG D) TETRAHYDROFOLYLPOLYGLUTAMATE SYNTHASE |
AT4G26840 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0090
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT4G10920 | PredictedReconstituted Complex | FSW = 0.1143
| Unknown | KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR |
AT4G17190 | PredictedPhenotypic Enhancement | FSW = 0.0951
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G34580 | PredictedAffinity Capture-MS | FSW = 0.0868
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT2G20290 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1906
| Unknown | XIG MOTOR/ PROTEIN BINDING |
AT2G31900 | PredictedAffinity Capture-MS | FSW = 0.1896
| Unknown | XIF MOTOR |
AT3G12200 | PredictedAffinity Capture-MSAffinity Capture-MSPhenotypic Enhancementinterologs mapping | FSW = 0.2936
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G47290 | PredictedPhenotypic Enhancement | FSW = 0.0676
| Unknown | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
AT4G21800 | PredictedReconstituted ComplexAffinity Capture-Western | FSW = 0.1072
| Unknown | QQT2 (QUATRE-QUART2) ATP BINDING / NUCLEOTIDE BINDING |
AT1G02630 | PredictedAffinity Capture-MS | FSW = 0.0138
| Unknown | EQUILIBRATIVE NUCLEOSIDE TRANSPORTER PUTATIVE (ENT8) |
AT1G10090 | PredictedSynthetic Rescue | FSW = 0.0850
| Unknown | UNKNOWN PROTEIN |
AT1G11510 | PredictedbiochemicalbiochemicalColocalization | FSW = 0.1457
| Unknown | DNA-BINDING STOREKEEPER PROTEIN-RELATED |
AT1G11755 | PredictedAffinity Capture-MSbiochemical | FSW = 0.1296
| Unknown | LEW1 (LEAF WILTING 1) DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE |
AT1G68020 | PredictedAffinity Capture-Western | FSW = 0.1176
| Unknown | ATTPS6 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT2G15910 | Predictedsynthetic growth defectAffinity Capture-MS | FSW = 0.1240
| Unknown | CSL ZINC FINGER DOMAIN-CONTAINING PROTEIN |
AT3G18850 | PredictedColocalization | FSW = 0.0637
| Unknown | LPAT5 ACYLTRANSFERASE |
AT3G44590 | PredictedAffinity Capture-MS | FSW = 0.0197
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2D) |
AT3G50780 | PredictedAffinity Capture-MS | FSW = 0.1455
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PRLI-INTERACTING FACTOR-RELATED (TAIRAT1G638501) HAS 173 BLAST HITS TO 173 PROTEINS IN 14 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 8 FUNGI - 0 PLANTS - 164 VIRUSES - 0 OTHER EUKARYOTES - 1 (SOURCE NCBI BLINK) |
AT4G14000 | PredictedSynthetic Rescue | FSW = 0.0375
| Unknown | UNKNOWN PROTEIN |
AT4G17380 | PredictedReconstituted Complex | FSW = 0.0111
| Unknown | MSH4 (MUTS HOMOLOG 4) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING |
AT5G01430 | Predictedbiochemical | FSW = 0.1481
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT5G13860 | PredictedCo-purificationCo-purificationPhenotypic Suppression | FSW = 0.2006
| Unknown | ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE |
AT5G15240 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0889
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT5G45620 | PredictedAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-WesternReconstituted Complex | FSW = 0.0912
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G46150 | PredictedAffinity Capture-MS | FSW = 0.0055
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT5G48710 | PredictedAffinity Capture-MS | FSW = 0.0356
| Unknown | UBIQUITIN-RELATED |
AT5G54940 | PredictedPhenotypic Enhancement | FSW = 0.0323
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT5G01770 | PredictedPhenotypic Suppression | FSW = 0.0797
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT3G25230 | PredictedAffinity Capture-MS | FSW = 0.0120
| Unknown | ROF1 (ROTAMASE FKBP 1) FK506 BINDING / CALMODULIN BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT1G60620 | PredictedAffinity Capture-MS | FSW = 0.0111
| Unknown | ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT1G53880 | PredictedAffinity Capture-MS | FSW = 0.0227
| Unknown | GTP BINDING / TRANSLATION INITIATION FACTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454