Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G27180 - ( ATK2 (ARABIDOPSIS THALIANA KINESIN 2) microtubule binding / microtubule motor )
61 Proteins interacs with AT4G27180Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G54670 | Experimentalin vitroReconstituted Complex | FSW = 0.5687
| Unknown | ATK3 (ARABIDOPSIS THALIANA KINESIN 3) ATPASE/ MICROTUBULE BINDING / MICROTUBULE MOTOR |
AT4G14960 | PredictedReconstituted Complex | FSW = 0.0946
| Unknown | TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G61000 | Predictedtwo hybridtwo hybrid | FSW = 0.0642
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN MITOSIS LOCATED IN PLASMA MEMBRANE EXPRESSED IN CULTURED CELL CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NUF2 (INTERPROIPR005549) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS MYOSIN HEAVY CHAIN-RELATED (TAIRAT1G643301) HAS 41010 BLAST HITS TO 23184 PROTEINS IN 1264 SPECIES ARCHAE - 616 BACTERIA - 3998 METAZOA - 20566 FUNGI - 2893 PLANTS - 1316 VIRUSES - 149 OTHER EUKARYOTES - 11472 (SOURCE NCBI BLINK) |
AT3G60840 | PredictedSynthetic Lethality | FSW = 0.3857
| Unknown | MAP65-4 (MICROTUBULE-ASSOCIATED PROTEIN 65-4) |
AT3G22110 | PredictedSynthetic Lethality | FSW = 0.0874
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G29210 | Predictedinterologs mapping | FSW = 0.0142
| Unknown | GGT4 (GAMMA-GLUTAMYL TRANSPEPTIDASE 4) GAMMA-GLUTAMYLTRANSFERASE/ GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE |
AT3G02520 | PredictedSynthetic Lethality | FSW = 0.0920
| Unknown | GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G80070 | Predictedtwo hybrid | FSW = 0.0157
| Unknown | SUS2 (ABNORMAL SUSPENSOR 2) |
AT2G28190 | PredictedSynthetic Lethality | FSW = 0.1621
| Unknown | CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE |
AT3G54670 | Predictedtwo hybrid | FSW = 0.0204
| Unknown | TTN8 (TITAN8) ATP BINDING / TRANSPORTER |
AT4G35800 | PredictedPhenotypic Enhancement | FSW = 0.0187
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G48750 | Predictedbiochemicaltwo hybrid | FSW = 0.0435
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT5G12250 | PredictedReconstituted Complex | FSW = 0.1474
| Unknown | TUB6 (BETA-6 TUBULIN) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G61650 | PredictedReconstituted Complex | FSW = 0.2149
| Unknown | TUBG1 (GAMMA-TUBULIN) GTP BINDING / GTPASE/ STRUCTURAL MOLECULE |
AT1G07670 | PredictedSynthetic Lethality | FSW = 0.0352
| Unknown | CALCIUM-TRANSPORTING ATPASE |
AT5G52640 | PredictedSynthetic Lethality | FSW = 0.0289
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT2G30260 | PredictedPhenotypic Enhancement | FSW = 0.0418
| Unknown | U2B (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT5G67270 | PredictedSynthetic Lethality | FSW = 0.3712
| Unknown | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
AT2G03870 | PredictedPhenotypic Enhancement | FSW = 0.1034
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT1G07370 | PredictedPhenotypic Enhancement | FSW = 0.1660
| Unknown | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT3G48430 | PredictedPhenotypic Enhancement | FSW = 0.0346
| Unknown | REF6 (RELATIVE OF EARLY FLOWERING 6) NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT1G20140 | Predictedinterologs mapping | FSW = 0.0147
| Unknown | ASK4 (ARABIDOPSIS SKP1-LIKE 4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G05620 | PredictedPhenotypic EnhancementPhenotypic EnhancementEnriched domain pair | FSW = 0.0710
| Unknown | GCP2 (GAMMA-TUBULIN COMPLEX PROTEIN 2) GTP BINDING / GTPASE/ STRUCTURAL MOLECULE |
AT2G35630 | PredictedSynthetic Lethality | FSW = 0.1630
| Unknown | MOR1 (MICROTUBULE ORGANIZATION 1) MICROTUBULE BINDING |
AT3G25980 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.2137
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT2G36200 | PredictedSynthetic Rescue | FSW = 0.2944
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT3G57870 | PredictedPhenotypic SuppressionPhenotypic Suppression | FSW = 0.0271
| Unknown | SCE1 (SUMO CONJUGATION ENZYME 1) SUMO LIGASE |
AT1G04730 | PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.3023
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G08780 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.2401
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT1G29150 | PredictedPhenotypic Enhancement | FSW = 0.0946
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
AT1G29990 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.2318
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT1G51710 | PredictedSynthetic Lethality | FSW = 0.0892
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
AT1G52740 | PredictedPhenotypic Enhancement | FSW = 0.1690
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT1G66740 | PredictedSynthetic Lethality | FSW = 0.1001
| Unknown | SGA2 |
AT1G79890 | PredictedSynthetic Lethality | FSW = 0.3199
| Unknown | HELICASE-RELATED |
AT2G15790 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.0276
| Unknown | SQN (SQUINT) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT2G33560 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.1524
| Unknown | SPINDLE CHECKPOINT PROTEIN-RELATED |
AT3G02820 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.2499
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT3G22480 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.2448
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT3G49650 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethalitysynthetic growth defectPhenotypic Enhancement | FSW = 0.1950
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT3G54380 | PredictedPhenotypic Enhancement | FSW = 0.1446
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT4G08960 | PredictedSynthetic Lethality | FSW = 0.1342
| Unknown | PHOSPHOTYROSYL PHOSPHATASE ACTIVATOR (PTPA) FAMILY PROTEIN |
AT1G07270 | PredictedSynthetic Lethality | FSW = 0.0652
| Unknown | CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B) |
AT1G67190 | Predictedsynthetic growth defect | FSW = 0.1606
| Unknown | F-BOX FAMILY PROTEIN |
AT2G02760 | PredictedSynthetic Lethality | FSW = 0.1633
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT2G37420 | PredictedSynthetic RescueSynthetic Rescue | FSW = 0.0184
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT2G44580 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.3259
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT3G25100 | PredictedSynthetic Lethality | FSW = 0.1109
| Unknown | CDC45 (CELL DIVISION CYCLE 45) |
AT3G42660 | PredictedSynthetic Lethality | FSW = 0.3023
| Unknown | NUCLEOTIDE BINDING |
AT3G58560 | PredictedSynthetic Lethality | FSW = 0.0858
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT4G35620 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.0293
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT4G38630 | Predictedsynthetic growth defectSynthetic LethalityPhenotypic Enhancement | FSW = 0.1180
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G10960 | PredictedSynthetic Lethality | FSW = 0.1132
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT5G23290 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.2386
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G49510 | PredictedSynthetic Lethality | FSW = 0.2609
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT4G39050 | PredictedSynthetic Rescue | FSW = 0.3126
| Unknown | KINESIN-RELATED PROTEIN (MKRP2) |
AT5G13780 | PredictedSynthetic Lethality | FSW = 0.1340
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT5G27740 | PredictedPhenotypic Enhancement | FSW = 0.1081
| Unknown | EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G45600 | PredictedPhenotypic Enhancement | FSW = 0.2290
| Unknown | GAS41 PROTEIN BINDING |
AT5G67320 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.0819
| Unknown | HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15) |
AT1G19290 | PredictedGene fusion method | FSW = 0.0150
| Unknown | LOCATED IN MITOCHONDRION EXPRESSED IN 12 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PENTATRICOPEPTIDE REPEAT (INTERPROIPR002885) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN (TAIRAT5G558401) HAS 31003 BLAST HITS TO 6161 PROTEINS IN 194 SPECIES ARCHAE - 6 BACTERIA - 22 METAZOA - 935 FUNGI - 736 PLANTS - 27904 VIRUSES - 0 OTHER EUKARYOTES - 1400 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454