Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G27690 - ( VPS26B (VACUOLAR PROTEIN SORTING 26B) )

12 Proteins interacs with AT4G27690
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G47810

Experimental

FSW = 0.4602

Unknown

MAG1 (MAIGO 1) HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G62880

Predicted

Affinity Capture-MS

FSW = 0.0409

Unknown

ARAC10 GTP BINDING
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0136

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT2G22290

Predicted

Synthetic Lethality

FSW = 0.0790

Unknown

ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING
AT3G02580

Predicted

Synthetic Lethality

FSW = 0.1292

Unknown

STE1 (STEROL 1) C-5 STEROL DESATURASE
AT5G18380

Predicted

Synthetic Rescue

FSW = 0.0660

Unknown

40S RIBOSOMAL PROTEIN S16 (RPS16C)
AT1G80460

Predicted

Synthetic Rescue

FSW = 0.1323

Unknown

NHO1 (NONHOST RESISTANCE TO P S PHASEOLICOLA 1) CARBOHYDRATE KINASE/ GLYCEROL KINASE
AT2G17790

Predicted

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-Western

Co-purification

Phenotypic Suppression

Affinity Capture-MS

FSW = 0.4667

Unknown

VPS35A (VPS35 HOMOLOG A)
AT5G10260

Predicted

Synthetic Lethality

FSW = 0.0460

Unknown

ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT1G75850

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-Western

Co-purification

Phenotypic Suppression

FSW = 0.3472

Unknown

VPS35B (VPS35 HOMOLOG B)
AT5G43710

Predicted

two hybrid

FSW = 0.0978

Unknown

GLYCOSIDE HYDROLASE FAMILY 47 PROTEIN
AT5G53530

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3968

Unknown

VPS26A (VACUOLAR PROTEIN SORTING 26A)

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454