Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G27740 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown CONTAINS InterPro DOMAIN/s Yippee-like protein (InterProIPR004910) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT4G277451) Has 684 Blast hits to 682 proteins in 148 species Archae - 0 Bacteria - 0 Metazoa - 389 Fungi - 132 Plants - 111 Viruses - 0 Other Eukaryotes - 52 (source NCBI BLink) )
12 Proteins interacs with AT4G27740| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G20890
   | PredictedAffinity Capture-MS | FSW = 0.0876
| Unknown | CHAPERONIN PUTATIVE |
| AT5G26360
| PredictedAffinity Capture-MS | FSW = 0.0818
| Unknown | CHAPERONIN PUTATIVE |
| AT3G55070
| PredictedAffinity Capture-MS | FSW = 0.1981
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CTLH C-TERMINAL TO LISH MOTIF (INTERPROIPR006595) LISH DIMERISATION MOTIF (INTERPROIPR006594) CT11-RANBPM (INTERPROIPR013144) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PROTEIN BINDING / ZINC ION BINDING (TAIRAT4G378801) HAS 669 BLAST HITS TO 649 PROTEINS IN 147 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 334 FUNGI - 200 PLANTS - 87 VIRUSES - 0 OTHER EUKARYOTES - 48 (SOURCE NCBI BLINK) |
| AT2G22690
| PredictedAffinity Capture-MS | FSW = 0.1882
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
| AT2G26000
| PredictedAffinity Capture-MS | FSW = 0.1184
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
| AT2G36300
| Predictedtwo hybridtwo hybrid | FSW = 0.0205
| Unknown | INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN |
| AT1G71790
| Predictedtwo hybridtwo hybrid | FSW = 0.0167
| Unknown | F-ACTIN CAPPING PROTEIN BETA SUBUNIT FAMILY PROTEIN |
| AT4G27745
| PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.4630
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S YIPPEE-LIKE PROTEIN (INTERPROIPR004910) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS YIPPEE FAMILY PROTEIN (TAIRAT5G539401) HAS 697 BLAST HITS TO 697 PROTEINS IN 149 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 401 FUNGI - 132 PLANTS - 110 VIRUSES - 0 OTHER EUKARYOTES - 54 (SOURCE NCBI BLINK) |
| AT3G11230
| PredictedPhylogenetic profile method | FSW = 0.0842
| Unknown | YIPPEE FAMILY PROTEIN |
| AT3G08990
| PredictedPhylogenetic profile method | FSW = 0.2297
| Unknown | YIPPEE FAMILY PROTEIN |
| AT2G40110
| PredictedPhylogenetic profile method | FSW = 0.7202
| Unknown | YIPPEE FAMILY PROTEIN |
| AT3G55890
| PredictedPhylogenetic profile method | FSW = 0.3131
| Unknown | YIPPEE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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