Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G28200 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN RNA processing LOCATED IN intracellular EXPRESSED IN 22 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s RNA-processing protein HAT helix (InterProIPR003107) U3 small nucleolar RNA-associated protein 6 (InterProIPR013949) Has 352 Blast hits to 342 proteins in 144 species Archae - 0 Bacteria - 0 Metazoa - 111 Fungi - 130 Plants - 24 Viruses - 0 Other Eukaryotes - 87 (source NCBI BLink) )

49 Proteins interacs with AT4G28200
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G09200

Predicted

Affinity Capture-MS

FSW = 0.0641

Unknown

60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B)
AT2G17360

Predicted

Affinity Capture-MS

FSW = 0.1853

Unknown

40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT5G15200

Predicted

Affinity Capture-MS

FSW = 0.2416

Unknown

40S RIBOSOMAL PROTEIN S9 (RPS9B)
AT5G20290

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2508

Unknown

40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT1G16030

Predicted

Affinity Capture-MS

FSW = 0.0107

Unknown

HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING
AT3G04840

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0659

Unknown

40S RIBOSOMAL PROTEIN S3A (RPS3AA)
AT3G06530

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5355

Unknown

BINDING
AT4G34670

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1179

Unknown

40S RIBOSOMAL PROTEIN S3A (RPS3AB)
AT3G11964Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.2935

Unknown

RNA BINDING
AT4G00100

Predicted

Affinity Capture-MS

FSW = 0.3515

Unknown

ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G77840

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0312

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE
AT1G63780

Predicted

Affinity Capture-MS

FSW = 0.3103

Unknown

IMP4
AT1G63810

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.5128

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK)
AT4G25630

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.2694

Unknown

FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT3G56990

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.4752

Unknown

EDA7 (EMBRYO SAC DEVELOPMENT ARREST 7)
AT5G37720

Predicted

Affinity Capture-MS

FSW = 0.0181

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT3G21540

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.5371

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G05060

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.3651

Unknown

SAR DNA-BINDING PROTEIN PUTATIVE
AT3G12860

Predicted

Affinity Capture-MS

FSW = 0.4815

Unknown

NUCLEOLAR PROTEIN NOP56 PUTATIVE
AT4G05410

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.6660

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G66540

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.6499

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN CYTOSOL NUCLEOLUS NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN COMPLEX SUBUNIT MPP10P (INTERPROIPR012173) MPP10 PROTEIN (INTERPROIPR007151) HAS 76240 BLAST HITS TO 38667 PROTEINS IN 1479 SPECIES ARCHAE - 252 BACTERIA - 6537 METAZOA - 31185 FUNGI - 9935 PLANTS - 3937 VIRUSES - 750 OTHER EUKARYOTES - 23644 (SOURCE NCBI BLINK)
AT3G57000

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.7136

Unknown

NUCLEOLAR ESSENTIAL PROTEIN-RELATED
AT4G30990

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.0768

Unknown

BINDING
AT2G47990

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.5065

Unknown

SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING
AT5G59240

Predicted

Affinity Capture-MS

FSW = 0.2300

Unknown

40S RIBOSOMAL PROTEIN S8 (RPS8B)
AT1G10490

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.4108

Unknown

UNKNOWN PROTEIN
AT3G29130

Predicted

two hybrid

FSW = 0.0220

Unknown

UNKNOWN PROTEIN
AT1G06720

Predicted

Affinity Capture-MS

FSW = 0.5844

Unknown

INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G424401) HAS 7944 BLAST HITS TO 5342 PROTEINS IN 373 SPECIES ARCHAE - 33 BACTERIA - 667 METAZOA - 2609 FUNGI - 1045 PLANTS - 414 VIRUSES - 80 OTHER EUKARYOTES - 3096 (SOURCE NCBI BLINK)
AT1G15440

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2921

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G17250

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.6796

Unknown

EMB2762 (EMBRYO DEFECTIVE 2762)
AT2G47420

Predicted

Affinity Capture-MS

FSW = 0.3595

Unknown

DIMETHYLADENOSINE TRANSFERASE PUTATIVE
AT3G09720

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.2815

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT3G10530

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.5794

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G13230

Predicted

Affinity Capture-MS

FSW = 0.3526

Unknown

RNA BINDING
AT4G04940

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.6108

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G07410

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.7035

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G31660

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4612

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK)
AT1G69070

Predicted

Affinity Capture-MS

FSW = 0.5411

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NOP14-LIKE PROTEIN (INTERPROIPR007276) HAS 64668 BLAST HITS TO 30830 PROTEINS IN 1152 SPECIES ARCHAE - 207 BACTERIA - 18692 METAZOA - 20758 FUNGI - 6782 PLANTS - 2177 VIRUSES - 523 OTHER EUKARYOTES - 15529 (SOURCE NCBI BLINK)
AT1G72320

Predicted

Affinity Capture-MS

FSW = 0.3865

Unknown

APUM23 (ARABIDOPSIS PUMILIO 23) RNA BINDING / BINDING
AT4G30991Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.6032

Unknown

APUM23 (ARABIDOPSIS PUMILIO 23) RNA BINDING / BINDING
AT5G08420

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.4805

Unknown

RNA BINDING
AT5G14050

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2754

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G16750

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.3443

Unknown

TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING
AT4G28450

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.6171

Unknown

NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G15750

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.6750

Unknown

RNA-BINDING S4 DOMAIN-CONTAINING PROTEIN
AT5G02530

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0218

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT2G40010

Predicted

Affinity Capture-MS

FSW = 0.0408

Unknown

60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0A)
AT1G27470

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3879

Unknown

TRANSDUCIN-RELATED / WD-40 REPEAT PROTEIN-RELATED
AT1G36730

Predicted

Affinity Capture-MS

FSW = 0.0189

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454