Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G28220 - ( NDB1 (NAD(P)H dehydrogenase B1) NADH dehydrogenase/ disulfide oxidoreductase )
20 Proteins interacs with AT4G28220Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G20800 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1667
| Class C:peroxisomemitochondrion | NDB4 (NAD(P)H DEHYDROGENASE B4) NADH DEHYDROGENASE |
AT2G29990 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0795
| Class C:peroxisomemitochondrion | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
AT1G07180 | PredictedAffinity Capture-MSAffinity Capture-MSPhylogenetic profile methodCo-expression | FSW = 0.3548
| Class C:peroxisomemitochondrion | NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE |
AT5G63400 | PredictedAffinity Capture-MS | FSW = 0.0844
| Class C:mitochondrion | ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR |
AT4G05020 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1442
| Class C:mitochondrion | NDB2 (NAD(P)H DEHYDROGENASE B2) FAD BINDING / DISULFIDE OXIDOREDUCTASE/ OXIDOREDUCTASE |
AT3G55605 | PredictedAffinity Capture-MS | FSW = 0.0302
| Class C:mitochondrion | MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN |
AT1G23740 | PredictedAffinity Capture-MS | FSW = 0.5895
| Unknown | OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN |
AT4G23700 | PredictedAffinity Capture-MS | FSW = 0.6213
| Unknown | ATCHX17 (CATION/H+ EXCHANGER 17) MONOVALENT CATIONPROTON ANTIPORTER/ SODIUMHYDROGEN ANTIPORTER |
AT4G33090 | PredictedAffinity Capture-MS | FSW = 0.1041
| Unknown | APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE |
AT2G29140 | PredictedAffinity Capture-MS | FSW = 0.6627
| Unknown | APUM3 (ARABIDOPSIS PUMILIO 3) RNA BINDING / BINDING |
AT1G50060 | PredictedAffinity Capture-MS | FSW = 0.6757
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.0105
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT3G08910 | PredictedAffinity Capture-MS | FSW = 0.4987
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT1G68310 | PredictedAffinity Capture-MS | FSW = 0.4257
| Unknown | VACUOLAR SORTING SIGNAL BINDING |
AT2G31760 | PredictedAffinity Capture-MS | FSW = 0.5610
| Unknown | ZINC FINGER PROTEIN-RELATED |
AT3G60860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2778
| Unknown | GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN |
AT4G22756 | PredictedAffinity Capture-MS | FSW = 0.3879
| Unknown | SMO1-2 (STEROL C4-METHYL OXIDASE 1-2) 44-DIMETHYL-9BETA19-CYCLOPROPYLSTEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE/ CATALYTIC |
AT5G44635 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3343
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT5G56510 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.6213
| Unknown | APUM12 (ARABIDOPSIS PUMILIO 12) RNA BINDING / BINDING |
AT4G21490 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0556
| Unknown | NDB3 NADH DEHYDROGENASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454