Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G28220 - ( NDB1 (NAD(P)H dehydrogenase B1) NADH dehydrogenase/ disulfide oxidoreductase )

20 Proteins interacs with AT4G28220
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G20800

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1667

Class C:

peroxisome

mitochondrion

NDB4 (NAD(P)H DEHYDROGENASE B4) NADH DEHYDROGENASE
AT2G29990

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0795

Class C:

peroxisome

mitochondrion

NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE
AT1G07180

Predicted

Affinity Capture-MS

Affinity Capture-MS

Phylogenetic profile method

Co-expression

FSW = 0.3548

Class C:

peroxisome

mitochondrion

NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE
AT5G63400

Predicted

Affinity Capture-MS

FSW = 0.0844

Class C:

mitochondrion

ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR
AT4G05020

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1442

Class C:

mitochondrion

NDB2 (NAD(P)H DEHYDROGENASE B2) FAD BINDING / DISULFIDE OXIDOREDUCTASE/ OXIDOREDUCTASE
AT3G55605

Predicted

Affinity Capture-MS

FSW = 0.0302

Class C:

mitochondrion

MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN
AT1G23740

Predicted

Affinity Capture-MS

FSW = 0.5895

Unknown

OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN
AT4G23700

Predicted

Affinity Capture-MS

FSW = 0.6213

Unknown

ATCHX17 (CATION/H+ EXCHANGER 17) MONOVALENT CATIONPROTON ANTIPORTER/ SODIUMHYDROGEN ANTIPORTER
AT4G33090

Predicted

Affinity Capture-MS

FSW = 0.1041

Unknown

APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE
AT2G29140

Predicted

Affinity Capture-MS

FSW = 0.6627

Unknown

APUM3 (ARABIDOPSIS PUMILIO 3) RNA BINDING / BINDING
AT1G50060

Predicted

Affinity Capture-MS

FSW = 0.6757

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT4G17190

Predicted

Affinity Capture-MS

FSW = 0.0105

Unknown

FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT3G08910

Predicted

Affinity Capture-MS

FSW = 0.4987

Unknown

DNAJ HEAT SHOCK PROTEIN PUTATIVE
AT1G68310

Predicted

Affinity Capture-MS

FSW = 0.4257

Unknown

VACUOLAR SORTING SIGNAL BINDING
AT2G31760

Predicted

Affinity Capture-MS

FSW = 0.5610

Unknown

ZINC FINGER PROTEIN-RELATED
AT3G60860

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2778

Unknown

GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN
AT4G22756

Predicted

Affinity Capture-MS

FSW = 0.3879

Unknown

SMO1-2 (STEROL C4-METHYL OXIDASE 1-2) 44-DIMETHYL-9BETA19-CYCLOPROPYLSTEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE/ CATALYTIC
AT5G44635

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3343

Unknown

MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN
AT5G56510

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.6213

Unknown

APUM12 (ARABIDOPSIS PUMILIO 12) RNA BINDING / BINDING
AT4G21490

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0556

Unknown

NDB3 NADH DEHYDROGENASE

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454