Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G28860 - ( ckl4 (Casein Kinase I-like 4) ATP binding / kinase/ protein kinase/ protein serine/threonine kinase )
63 Proteins interacs with AT4G28860Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G13460 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic EnhancementSynthetic Lethality | FSW = 0.2613
| Class C:nucleuscytosol | ECT2 PROTEIN BINDING |
AT4G14340 | PredictedPhylogenetic profile method | FSW = 0.0171
| Class C:nucleuscytosol | CKI1 (CASEIN KINASE I) KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G28880 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.1725
| Class C:nucleuscytosol | CKL3 (CASEIN KINASE I-LIKE 3) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G14420 | PredictedAffinity Capture-Western | FSW = 0.0847
| Class C:nucleus | (S)-2-HYDROXY-ACID OXIDASE PEROXISOMAL PUTATIVE / GLYCOLATE OXIDASE PUTATIVE / SHORT CHAIN ALPHA-HYDROXY ACID OXIDASE PUTATIVE |
AT3G03920 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSSynthetic Lethality | FSW = 0.0321
| Class C:nucleus | GAR1 RNA-BINDING REGION FAMILY PROTEIN |
AT4G09800 | PredictedPhenotypic Enhancement | FSW = 0.0858
| Class C:nucleus | RPS18C (S18 RIBOSOMAL PROTEIN) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G54840 | PredictedAffinity Capture-MS | FSW = 0.0085
| Class C:nucleus | SGP1 GTP BINDING |
AT1G72560 | PredictedAffinity Capture-WesternAffinity Capture-MSReconstituted Complextwo hybridAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSReconstituted ComplexAffinity Capture-Westerntwo hybridCo-purificationColocalization | FSW = 0.1640
| Class C:nucleus | PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING |
AT2G38560 | PredictedAffinity Capture-MS | FSW = 0.0049
| Class C:nucleus | TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR |
AT5G43320 | PredictedPhylogenetic profile method | FSW = 0.0856
| Class C:cytosol | CKL8 (CASEIN KINASE I-LIKE 8) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G19470 | PredictedPhylogenetic profile method | FSW = 0.0317
| Class C:cytosol | CKL5 (CASEIN KINASE I-LIKE 5) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G62870 | Predictedtwo hybridsynthetic growth defect | FSW = 0.0251
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G04440 | PredictedPhylogenetic profile method | FSW = 0.0304
| Unknown | CKL13 (CASEIN KINASE LIKE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G74560 | PredictedSynthetic Lethality | FSW = 0.0607
| Unknown | NRP1 (NAP1-RELATED PROTEIN 1) DNA BINDING / CHROMATIN BINDING / HISTONE BINDING |
AT4G26100 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.0522
| Unknown | CK1 (CASEIN KINASE 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G23340 | PredictedPhylogenetic profile method | FSW = 0.0256
| Unknown | CKL10 (CASEIN KINASE I-LIKE 10) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G04940 | Predictedtwo hybrid | FSW = 0.0296
| Unknown | SCRAMBLASE-RELATED |
AT3G22890 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.1049
| Unknown | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
AT1G77750 | PredictedPhenotypic Enhancement | FSW = 0.0316
| Unknown | 30S RIBOSOMAL PROTEIN S13 CHLOROPLAST PUTATIVE |
AT3G44610 | PredictedAffinity Capture-MSColocalizationAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.1561
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G15450 | PredictedPhenotypic Enhancementtwo hybrid | FSW = 0.0865
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G12900 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0420
| Unknown | GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT3G54670 | PredictedPhenotypic Enhancement | FSW = 0.0592
| Unknown | TTN8 (TITAN8) ATP BINDING / TRANSPORTER |
AT5G58640 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westerntwo hybridCo-purificationColocalization | FSW = 0.3171
| Unknown | SELENOPROTEIN-RELATED |
AT1G04750 | PredictedPhenotypic Enhancement | FSW = 0.0813
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT5G20080 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0159
| Unknown | NADH-CYTOCHROME B5 REDUCTASE PUTATIVE |
AT5G47630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1574
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
AT2G30160 | PredictedPhenotypic Enhancement | FSW = 0.1133
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT2G19980 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhenotypic Enhancement | FSW = 0.1757
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G33710 | PredictedAffinity Capture-MSAffinity Capture-MSReconstituted ComplexAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridColocalizationReconstituted ComplexAffinity Capture-WesternCo-purificationinterologs mapping | FSW = 0.1745
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G54840 | PredictedPhenotypic Enhancement | FSW = 0.0850
| Unknown | ARA6 GTP BINDING / GTPASE |
AT4G16420 | PredictedPhenotypic Enhancement | FSW = 0.0556
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT4G39200 | PredictedPhenotypic Enhancement | FSW = 0.1501
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT5G10330 | PredictedAffinity Capture-WesternAffinity Capture-Western | FSW = 0.0332
| Unknown | HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) HISTIDINOL-PHOSPHATE TRANSAMINASE |
AT1G62800 | PredictedPhenotypic Enhancement | FSW = 0.0768
| Unknown | ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS |
AT2G29540 | PredictedAffinity Capture-Western | FSW = 0.0770
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT3G44320 | PredictedReconstituted ComplexAffinity Capture-Western | FSW = 0.0863
| Unknown | NIT3 (NITRILASE 3) INDOLE-3-ACETONITRILE NITRILASE/ INDOLE-3-ACETONITRILE NITRILE HYDRATASE/ NITRILASE |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.0735
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT3G06100 | PredictedAffinity Capture-MS | FSW = 0.0358
| Unknown | NIP71 (NOD26-LIKE INTRINSIC PROTEIN 71) WATER CHANNEL |
AT1G13580 | PredictedPhenotypic Enhancement | FSW = 0.1206
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
AT1G26320 | PredictedAffinity Capture-MSinterologs mappingAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridColocalizationReconstituted ComplexCo-purification | FSW = 0.2543
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT1G35350 | PredictedPhenotypic Enhancement | FSW = 0.0906
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK) |
AT1G68530 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSColocalizationtwo hybrid | FSW = 0.3099
| Unknown | KCS6 (3-KETOACYL-COA SYNTHASE 6) CATALYTIC/ TRANSFERASE TRANSFERRING ACYL GROUPS OTHER THAN AMINO-ACYL GROUPS |
AT1G77780 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.1345
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT2G16740 | PredictedAffinity Capture-MS | FSW = 0.0031
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G31900 | PredictedAffinity Capture-MS | FSW = 0.0653
| Unknown | XIF MOTOR |
AT2G47090 | PredictedSynthetic Rescue | FSW = 0.0367
| Unknown | NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT2G47970 | PredictedReconstituted Complexinterologs mappingAffinity Capture-Western | FSW = 0.0888
| Unknown | NPL4 FAMILY PROTEIN |
AT3G16565 | PredictedAffinity Capture-MS | FSW = 0.0630
| Unknown | ATP BINDING / ALANINE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G25900 | PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.0768
| Unknown | HMT-1 HOMOCYSTEINE S-METHYLTRANSFERASE |
AT4G04700 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSColocalization | FSW = 0.1668
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G21480 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1129
| Unknown | CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G20870 | PredictedAffinity Capture-MS | FSW = 0.0518
| Unknown | FAH2 (FATTY ACID HYDROXYLASE 2) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT4G35520 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternReconstituted ComplexCo-purification | FSW = 0.2723
| Unknown | MLH3 (MUTL PROTEIN HOMOLOG 3) ATP BINDING / MISMATCHED DNA BINDING |
AT5G04800 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2494
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17D) |
AT5G13480 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.0935
| Unknown | FY PROTEIN BINDING |
AT5G14060 | PredictedPhenotypic Enhancement | FSW = 0.1285
| Unknown | CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE |
AT5G42720 | PredictedPhenotypic Enhancement | FSW = 0.0901
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT5G06150 | PredictedAffinity Capture-MS | FSW = 0.0120
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G13860 | PredictedAffinity Capture-MS | FSW = 0.1518
| Unknown | ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE |
AT5G15240 | PredictedPhenotypic Enhancement | FSW = 0.0965
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT5G45190 | PredictedAffinity Capture-MS | FSW = 0.0088
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G49970 | PredictedPhenotypic Enhancement | FSW = 0.1477
| Unknown | ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454