Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G29130 - ( HXK1 (HEXOKINASE 1) ATP binding / fructokinase/ glucokinase/ hexokinase )

27 Proteins interacs with AT4G29130
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G01280

Experimental

FSW = 0.0222

Class A:

vacuole

unclear

mitochondrion

Class B:

plastid

plasma membrane

Class D:

cytosol (p = 0.67)

 VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL
AT1G76030

Experimental

two hybrid

Affinity Capture-MS

Affinity Capture-Western

coimmunoprecipitation

FSW = 0.0465

Class A:

vacuole

Class B:

unclear

plastid

plasma membrane

mitochondrion

Class D:

cytosol (p = 0.67)

 VACUOLAR ATP SYNTHASE SUBUNIT B / V-ATPASE B SUBUNIT / VACUOLAR PROTON PUMP B SUBUNIT / V-ATPASE 57 KDA SUBUNIT
AT3G18780

Experimental

FSW = 0.0281

Class A:

vacuole

Class B:

unclear

plasma membrane

nucleus

mitochondrion

Class D:

cytosol (p = 0.67)

 ACT2 (ACTIN 2) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G09100

Experimental

Affinity Capture-MS

two hybrid

Affinity Capture-Western

coimmunoprecipitation

FSW = 0.0133

Class B:

vacuole

unclear

plasma membrane

mitochondrion

Class D:

cytosol (p = 0.67)

 RPT5B (26S PROTEASOME AAA-ATPASE SUBUNIT RPT5B) ATPASE/ CALMODULIN BINDING
AT5G47120

Experimental

FSW = 0.0333

Class B:

vacuole

unclear

nucleus

mitochondrion

endoplasmic reticulum

cytosol

Class D:

extracellular (p = 0.86)

 ATBI1 (BAX INHIBITOR 1)
AT1G50420

Experimental

Affinity Capture-MS

FSW = 0.1935

Class B:

vacuole

unclear

nucleus

mitochondrion

Class D:

plastid (p = 0.78)

cytosol (p = 0.67)

 SCL3 TRANSCRIPTION FACTOR
AT3G11280

Experimental

Affinity Capture-MS

FSW = 0.1659

Class B:

vacuole

unclear

nucleus

mitochondrion

 MYB FAMILY TRANSCRIPTION FACTOR
AT1G50460

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.6437

Class C:

unclear

mitochondrion

 HKL1 (HEXOKINASE-LIKE 1) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT2G19860

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.0292

Class C:

unclear

mitochondrion

 HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT3G20040

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1393

Class C:

mitochondrion

 ATHXK4 ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0121

Unknown

 ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G07110

Predicted

two hybrid

FSW = 0.1452

Unknown

 F2KP (FRUCTOSE-26-BISPHOSPHATASE) FRUCTOSE-26-BISPHOSPHATE 2-PHOSPHATASE
AT2G27470

Predicted

Affinity Capture-MS

FSW = 0.0408

Unknown

 NF-YB11 (NUCLEAR FACTOR Y SUBUNIT B11) TRANSCRIPTION FACTOR
AT2G17200

Predicted

two hybrid

FSW = 0.0267

Unknown

 UBIQUITIN FAMILY PROTEIN
AT3G62760

Predicted

in vitro

two hybrid

FSW = 0.0109

Unknown

 ATGSTF13 GLUTATHIONE TRANSFERASE
AT1G08780

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0504

Unknown

 AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING
AT1G24706

Predicted

Affinity Capture-MS

FSW = 0.0368

Unknown

 UNKNOWN PROTEIN
AT1G29990

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0344

Unknown

 PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING
AT1G78580

Predicted

Synthetic Rescue

Phenotypic Suppression

interaction prediction

FSW = 0.0363

Unknown

 ATTPS1 (TREHALOSE-6-PHOSPHATE SYNTHASE) ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT2G34180

Predicted

Affinity Capture-MS

FSW = 0.0161

Unknown

 CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G01090

Predicted

Affinity Capture-Western

FSW = 0.0098

Unknown

 AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE
AT3G04600

Predicted

Affinity Capture-MS

FSW = 0.1161

Unknown

 TRNA SYNTHETASE CLASS I (W AND Y) FAMILY PROTEIN
AT3G06580

Predicted

Phenotypic Enhancement

FSW = 0.1000

Unknown

 GALK ATP BINDING / GALACTOKINASE
AT3G22480

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0462

Unknown

 PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT5G23290

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0397

Unknown

 PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING
AT5G49510

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0497

Unknown

 PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING
AT1G47840

Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.1683

Unknown

 HXK3 (HEXOKINASE 3) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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