Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G29140 - ( MATE efflux protein-related )

28 Proteins interacs with AT4G29140
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G12010

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0184

Unknown

UNKNOWN PROTEIN
AT3G62870

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0214

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT1G18540

Predicted

Affinity Capture-MS

FSW = 0.0076

Unknown

60S RIBOSOMAL PROTEIN L6 (RPL6A)
AT2G39290

Predicted

Affinity Capture-MS

FSW = 0.0213

Unknown

PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE
AT5G45970

Predicted

Affinity Capture-MS

FSW = 0.0163

Unknown

ARAC2 (ARABIDOPSIS RAC-LIKE 2) GTP BINDING
AT2G01680

Predicted

Gene fusion method

FSW = 0.0246

Unknown

ANKYRIN REPEAT FAMILY PROTEIN
AT1G59740

Predicted

Affinity Capture-MS

FSW = 0.0256

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT5G12350

Predicted

Affinity Capture-MS

FSW = 0.0092

Unknown

RAN GTPASE BINDING / CHROMATIN BINDING / ZINC ION BINDING
AT1G72560

Predicted

Affinity Capture-MS

FSW = 0.0262

Unknown

PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING
AT3G16050

Predicted

Affinity Capture-MS

FSW = 0.0206

Unknown

A37 PROTEIN HETERODIMERIZATION
AT4G30660

Predicted

Affinity Capture-MS

FSW = 0.0269

Unknown

HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE
AT1G19730

Predicted

Affinity Capture-MS

FSW = 0.0285

Unknown

ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR
AT2G46230

Predicted

Affinity Capture-MS

FSW = 0.0215

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF652 (INTERPROIPR006984) NUCLEOTIDE BINDING PROTEIN PINC (INTERPROIPR006596) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G265301) HAS 493 BLAST HITS TO 493 PROTEINS IN 165 SPECIES ARCHAE - 21 BACTERIA - 0 METAZOA - 192 FUNGI - 143 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 84 (SOURCE NCBI BLINK)
AT1G20696

Predicted

Affinity Capture-MS

FSW = 0.0178

Unknown

HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT1G62850

Predicted

Affinity Capture-MS

FSW = 0.0272

Unknown

TRANSLATION RELEASE FACTOR
AT1G66240

Predicted

Affinity Capture-MS

FSW = 0.0123

Unknown

ATX1 (ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1) METAL ION BINDING
AT1G80710

Predicted

Affinity Capture-MS

FSW = 0.0310

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G27920

Predicted

Affinity Capture-MS

FSW = 0.0178

Unknown

SCPL51 (SERINE CARBOXYPEPTIDASE-LIKE 51) SERINE-TYPE CARBOXYPEPTIDASE
AT3G54150

Predicted

Affinity Capture-MS

FSW = 0.0450

Unknown

EMBRYO-ABUNDANT PROTEIN-RELATED
AT4G04700

Predicted

Affinity Capture-MS

FSW = 0.0166

Unknown

CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT4G19880

Predicted

Affinity Capture-MS

FSW = 0.0262

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RESPONSE TO CADMIUM ION LOCATED IN CHLOROPLAST EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G450201) HAS 1635 BLAST HITS TO 1635 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 905 METAZOA - 23 FUNGI - 158 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 480 (SOURCE NCBI BLINK)
AT4G25950

Predicted

Affinity Capture-MS

FSW = 0.0075

Unknown

VATG3 (VACUOLAR ATP SYNTHASE G3) HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT4G29580

Predicted

Affinity Capture-MS

FSW = 0.0303

Unknown

CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE
AT4G32350

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

two hybrid

FSW = 0.0664

Unknown

UNKNOWN PROTEIN
AT5G13240

Predicted

Affinity Capture-MS

FSW = 0.0323

Unknown

TRANSCRIPTION REGULATOR
AT5G42600

Predicted

Affinity Capture-MS

FSW = 0.0693

Unknown

MRN1 (MARNERAL SYNTHASE) CATALYTIC/ MARNERAL SYNTHASE
AT5G48010

Predicted

Affinity Capture-MS

FSW = 0.0700

Unknown

THAS1 (THALIANOL SYNTHASE 1) CATALYTIC/ THALIANOL SYNTHASE
AT2G04100

Predicted

Phylogenetic profile method

FSW = 0.0269

Unknown

MATE EFFLUX FAMILY PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454