Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G29380 - ( protein kinase family protein / WD-40 repeat family protein )

11 Proteins interacs with AT4G29380
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G25070

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.1214

Unknown

PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE
AT2G26300

Predicted

Affinity Capture-Western

Reconstituted Complex

FSW = 0.0413

Unknown

GP ALPHA 1 (G PROTEIN ALPHA SUBUNIT 1) GTP BINDING / GTPASE/ CHANNEL REGULATOR/ SIGNAL TRANSDUCER
AT2G44950

Predicted

synthetic growth defect

FSW = 0.0763

Unknown

HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT2G31970

Predicted

synthetic growth defect

FSW = 0.1149

Unknown

RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING
AT5G54260

Predicted

synthetic growth defect

FSW = 0.1058

Unknown

MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G20850

Predicted

synthetic growth defect

FSW = 0.0506

Unknown

ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT1G60490

Predicted

in vivo

in vitro

interologs mapping

co-fractionation

Co-fractionation

Affinity Capture-Western

in vitro

interologs mapping

Affinity Capture-Western

co-fractionation

Co-fractionation

interaction prediction

Co-expression

FSW = 0.5687

Unknown

ATVPS34 1-PHOSPHATIDYLINOSITOL-3-KINASE/ BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR
AT3G61710

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Co-expression

FSW = 0.1412

Unknown

AUTOPHAGY PROTEIN APG6 FAMILY
AT4G25120Predicted

synthetic growth defect

FSW = 0.0578

Unknown

ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE
AT5G53770

Predicted

Synthetic Lethality

FSW = 0.0430

Unknown

NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN
AT1G55255Predicted

synthetic growth defect

FSW = 0.0926

Unknown

NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454