Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT4G29510 - ( PRMT11 (ARGININE METHYLTRANSFERASE 11) protein-arginine N-methyltransferase )
33 Proteins interacs with AT4G29510| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT2G19670
   | Experimental | FSW = 0.2771
| Class A:nucleuscytosolClass D:cytosol (p = 0.67) | PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A) PROTEIN-ARGININE N-METHYLTRANSFERASE |
| AT5G59800
| Experimentaltwo hybridcoimmunoprecipitationpull down | FSW = 0.0234
| Class A:nucleusClass B:cytosolClass D:mitochondrion (p = 0.82) | MBD7 (METHYL-CPG-BINDING DOMAIN 7) DNA BINDING / DNA DEMETHYLASE/ METHYL-CPG BINDING |
| AT4G25630
| Experimental | FSW = 0.0257
| Class A:nucleusClass B:cytosolClass D:mitochondrion (p = 0.82) | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
| AT5G16620
| Experimental | FSW = 0.0885
| Class B:plastidnucleuscytosol | TIC40 |
| AT1G63270
| Experimental | FSW = 0.0635
| Class D:mitochondrion (p = 0.82)cytosol (p = 0.67) | ATNAP10 TRANSPORTER |
| AT5G04280
| Predictedbiochemical | FSW = 0.0234
| Class C:nucleus | GLYCINE-RICH RNA-BINDING PROTEIN |
| AT3G03920
| Predictedbiochemical | FSW = 0.0407
| Class C:nucleus | GAR1 RNA-BINDING REGION FAMILY PROTEIN |
| AT5G59690 | Predictedbiochemical | FSW = 0.0132
| Class C:nucleus | HISTONE H4 |
| AT2G21660
| Predictedinteraction prediction | FSW = 0.0370
| Class C:nucleus | CCR2 (COLD CIRCADIAN RHYTHM AND RNA BINDING 2) RNA BINDING / DOUBLE-STRANDED DNA BINDING / SINGLE-STRANDED DNA BINDING |
| AT5G52470
| PredictedAffinity Capture-MS | FSW = 0.0486
| Class C:nucleus | FIB1 (FIBRILLARIN 1) SNORNA BINDING |
| AT3G50670
| Predictedinteraction predictiontwo hybridinterologs mapping | FSW = 0.0267
| Class C:nucleus | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT1G48920
| Predictedbiochemical | FSW = 0.0481
| Class C:nucleus | ATNUC-L1 NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT4G03120
| Predictedtwo hybrid | FSW = 0.1871
| Class C:nucleus | PROLINE-RICH FAMILY PROTEIN |
| AT4G13980
| Predictedbiochemical | FSW = 0.0143
| Class C:nucleus | AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR |
| AT4G00830
| Predictedbiochemical | FSW = 0.0317
| Class C:nucleus | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT4G14300
| Predictedbiochemicalbiochemicalbiochemical | FSW = 0.0202
| Class C:nucleus | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / HNRNP PUTATIVE |
| AT5G63400
| Predictedbiochemical | FSW = 0.0080
| Unknown | ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR |
| AT2G43160
| PredictedAffinity Capture-MS | FSW = 0.0777
| Unknown | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN |
| AT3G62870
| Predictedsynthetic growth defect | FSW = 0.0064
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
| AT3G26590
| Predictedbiochemical | FSW = 0.0158
| Unknown | MATE EFFLUX FAMILY PROTEIN |
| AT2G29080
| Predictedinteraction prediction | FSW = 0.0165
| Unknown | FTSH3 (FTSH PROTEASE 3) ATP-DEPENDENT PEPTIDASE/ ATPASE |
| AT2G39290
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0387
| Unknown | PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE |
| AT3G53870
| Predictedinterologs mapping | FSW = 0.0186
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
| AT5G47080
| Predictedtwo hybrid | FSW = 0.0093
| Unknown | CKB1 PROTEIN KINASE REGULATOR |
| AT1G58050
| PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0342
| Unknown | HELICASE DOMAIN-CONTAINING PROTEIN |
| AT5G49020
| PredictedPhenotypic Enhancement | FSW = 0.0515
| Unknown | PRMT4A (PROTEIN ARGININE METHYLTRANSFERASE 4A) [MYELIN BASIC PROTEIN]-ARGININE N-METHYLTRANSFERASE/ HISTONE-ARGININE N-METHYLTRANSFERASE/ METHYLTRANSFERASE/ PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION/ PROTEIN-ARGININE OMEGA-N ASYMMETRIC METHYLT |
| AT2G37925
| PredictedAffinity Capture-MS | FSW = 0.0202
| Unknown | COPT4 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
| AT3G46320 | Predictedbiochemical | FSW = 0.0113
| Unknown | HISTONE H4 |
| AT4G12790
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0986
| Unknown | ATP-BINDING FAMILY PROTEIN |
| AT2G18290
| Predictedtwo hybrid | FSW = 0.0256
| Unknown | ANAPHASE-PROMOTING COMPLEX SUBUNIT 10 FAMILY / APC10 FAMILY |
| AT3G02820
| Predictedinteraction predictionCo-expression | FSW = 0.0105
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
| AT1G04870
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.0824
| Unknown | PRMT10 METHYLTRANSFERASE |
| AT3G20020
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.0824
| Unknown | PRMT6 (PROTEIN ARGININE METHYLTRANSFERASE 6) METHYLTRANSFERASE |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
AtPIN is built and maintained by the System and Integrative Biology Laboratory of CBMEG / UNICAMPTAIR | Report a bug | Roadmap | This is AtPIN version 2.6.71
This page takes 0.631 seconds to be build.
This page takes 0.631 seconds to be build.