Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT4G29580 - ( cytidine deaminase putative / cytidine aminohydrolase putative )
59 Proteins interacs with AT4G29580Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G16660 | PredictedPhenotypic EnhancementSynthetic Rescuetwo hybrid | FSW = 0.1377
| Unknown | HEAT SHOCK PROTEIN 70 PUTATIVE / HSP70 PUTATIVE |
AT5G09660 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.2797
| Unknown | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
AT3G48170 | PredictedPhenotypic Enhancement | FSW = 0.1102
| Unknown | ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE |
AT5G19830 | PredictedPhenotypic Enhancement | FSW = 0.0358
| Unknown | AMINOACYL-TRNA HYDROLASE |
AT1G74710 | Predictedsynthetic growth defect | FSW = 0.1079
| Unknown | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
AT5G54770 | PredictedSynthetic Lethality | FSW = 0.0903
| Unknown | THI1 PROTEIN HOMODIMERIZATION |
AT2G45300 | PredictedPhenotypic Enhancement | FSW = 0.0191
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE |
AT1G45145 | PredictedSynthetic RescueSynthetic Rescue | FSW = 0.1020
| Unknown | ATTRX5 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT1G27450 | PredictedPhenotypic Enhancement | FSW = 0.0856
| Unknown | APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1) ADENINE PHOSPHORIBOSYLTRANSFERASE |
AT1G04750 | Predictedsynthetic growth defect | FSW = 0.2338
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT2G44690 | Predictedtwo hybrid | FSW = 0.0559
| Unknown | ARAC9 GTP BINDING |
AT4G14350 | PredictedSynthetic RescueSynthetic Lethality | FSW = 0.2503
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G21700 | Predictedsynthetic growth defect | FSW = 0.2576
| Unknown | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT1G06960 | PredictedPhenotypic Enhancement | FSW = 0.0603
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE |
AT1G28460 | PredictedPhenotypic Suppression | FSW = 0.1053
| Unknown | AGL59 (AGAMOUS-LIKE 59) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G65165 | Predictedtwo hybrid | FSW = 0.0166
| Unknown | SDH2-3 ELECTRON CARRIER/ SUCCINATE DEHYDROGENASE |
AT5G57625 | PredictedAffinity Capture-MS | FSW = 0.0100
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G33710 | PredictedPhenotypic Suppression | FSW = 0.0672
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G54840 | PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.1621
| Unknown | ARA6 GTP BINDING / GTPASE |
AT3G60360 | PredictedPhenotypic Enhancement | FSW = 0.0375
| Unknown | EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14) |
AT1G62800 | PredictedSynthetic Lethality | FSW = 0.1987
| Unknown | ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS |
AT1G19730 | PredictedPhenotypic Enhancement | FSW = 0.1519
| Unknown | ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT1G05180 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.2249
| Unknown | AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME |
AT3G59600 | Predictedtwo hybrid | FSW = 0.0235
| Unknown | NRPB8B DNA-DIRECTED RNA POLYMERASE |
AT5G49310 | Predictedtwo hybrid | FSW = 0.0204
| Unknown | IMPA-5 (IMPORTIN ALPHA ISOFORM 5) BINDING / PROTEIN TRANSPORTER |
AT5G19000 | Predictedtwo hybrid | FSW = 0.0179
| Unknown | ATBPM1 (BTB-POZ AND MATH DOMAIN 1) PROTEIN BINDING |
AT1G10980 | PredictedPhenotypic Enhancement | FSW = 0.3064
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN VACUOLE EXPRESSED IN 8 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G616701) HAS 482 BLAST HITS TO 481 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 255 FUNGI - 99 PLANTS - 97 VIRUSES - 0 OTHER EUKARYOTES - 31 (SOURCE NCBI BLINK) |
AT1G20693 | Predictedsynthetic growth defectsynthetic growth defectPhenotypic Enhancement | FSW = 0.1637
| Unknown | HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G25155 | Predictedsynthetic growth defect | FSW = 0.1304
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT1G27320 | PredictedPhenotypic Enhancement | FSW = 0.0668
| Unknown | AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE |
AT1G35350 | Predictedsynthetic growth defect | FSW = 0.3150
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK) |
AT1G44180 | Predictedsynthetic growth defect | FSW = 0.2158
| Unknown | AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE |
AT1G47830 | Predictedsynthetic growth defectPhenotypic Enhancementsynthetic growth defectPhenotypic Enhancement | FSW = 0.2778
| Unknown | CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE |
AT1G66590 | PredictedSynthetic RescueSynthetic RescueSynthetic Rescuetwo hybrid | FSW = 0.3533
| Unknown | COX19 FAMILY PROTEIN |
AT1G80710 | PredictedPhenotypic Suppression | FSW = 0.0384
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G02320 | PredictedSynthetic Lethality | FSW = 0.2013
| Unknown | RNA BINDING / TRNA (GUANINE-N2-)-METHYLTRANSFERASE |
AT3G22290 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.2376
| Unknown | UNKNOWN PROTEIN |
AT3G25900 | Predictedsynthetic growth defect | FSW = 0.2317
| Unknown | HMT-1 HOMOCYSTEINE S-METHYLTRANSFERASE |
AT4G10130 | PredictedPhenotypic Enhancement | FSW = 0.0941
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT4G21490 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.3349
| Unknown | NDB3 NADH DEHYDROGENASE |
AT4G27130 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.3107
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT4G29140 | PredictedAffinity Capture-MS | FSW = 0.0303
| Unknown | MATE EFFLUX PROTEIN-RELATED |
AT1G09810 | PredictedPhenotypic Suppression | FSW = 0.1330
| Unknown | ECT11 (EVOLUTIONARILY CONSERVED C-TERMINAL REGION 11) |
AT1G10210 | PredictedPhenotypic Enhancement | FSW = 0.0613
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT1G11510 | Predictedsynthetic growth defect | FSW = 0.2009
| Unknown | DNA-BINDING STOREKEEPER PROTEIN-RELATED |
AT1G29630 | Predictedsynthetic growth defect | FSW = 0.0660
| Unknown | NUCLEASE |
AT3G45240 | PredictedSynthetic Lethality | FSW = 0.2485
| Unknown | GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) KINASE |
AT3G47290 | PredictedPhenotypic Enhancement | FSW = 0.2450
| Unknown | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
AT4G14000 | PredictedPhenotypic Enhancement | FSW = 0.1176
| Unknown | UNKNOWN PROTEIN |
AT4G34370 | PredictedPhenotypic Enhancement | FSW = 0.1216
| Unknown | ARI1 (ARIADNE) PROTEIN BINDING / ZINC ION BINDING |
AT4G38250 | PredictedPhenotypic Suppression | FSW = 0.0546
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT5G01770 | PredictedPhenotypic Enhancementtwo hybridtwo hybridPhenotypic Enhancementinterologs mappingSynthetic Rescue | FSW = 0.3135
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT5G04800 | PredictedPhenotypic Enhancement | FSW = 0.0985
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17D) |
AT5G11500 | Predictedsynthetic growth defectsynthetic growth defectsynthetic growth defectPhenotypic Enhancement | FSW = 0.1623
| Unknown | UNKNOWN PROTEIN |
AT5G16170 | PredictedSynthetic Lethalitysynthetic growth defectPhenotypic Enhancement | FSW = 0.2562
| Unknown | UNKNOWN PROTEIN |
AT5G16980 | Predictedsynthetic growth defect | FSW = 0.3300
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G17860 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.3001
| Unknown | CAX7 (CALCIUM EXCHANGER 7) CALCIUMSODIUM ANTIPORTER/ CATIONCATION ANTIPORTER |
AT5G45620 | Predictedsynthetic growth defect | FSW = 0.1672
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
ATCG00905 | Predictedtwo hybridtwo hybridtwo hybridAffinity Capture-Western | FSW = 0.1565
| Unknown | CHLOROPLAST GENE ENCODING RIBOSOMAL PROTEIN S12 THE GENE IS LOCATED IN THREE DISTINCT LOCI ON THE CHLOROPLAST GENOME AND IS TRANSPLICED TO MAKE ONE TRANSCRIPT |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454