Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G29580 - ( cytidine deaminase putative / cytidine aminohydrolase putative )

59 Proteins interacs with AT4G29580
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G16660

Predicted

Phenotypic Enhancement

Synthetic Rescue

two hybrid

FSW = 0.1377

Unknown

HEAT SHOCK PROTEIN 70 PUTATIVE / HSP70 PUTATIVE
AT5G09660

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.2797

Unknown

PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE
AT3G48170

Predicted

Phenotypic Enhancement

FSW = 0.1102

Unknown

ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE
AT5G19830

Predicted

Phenotypic Enhancement

FSW = 0.0358

Unknown

AMINOACYL-TRNA HYDROLASE
AT1G74710

Predicted

synthetic growth defect

FSW = 0.1079

Unknown

ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE
AT5G54770

Predicted

Synthetic Lethality

FSW = 0.0903

Unknown

THI1 PROTEIN HOMODIMERIZATION
AT2G45300

Predicted

Phenotypic Enhancement

FSW = 0.0191

Unknown

3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE
AT1G45145

Predicted

Synthetic Rescue

Synthetic Rescue

FSW = 0.1020

Unknown

ATTRX5 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR
AT1G27450

Predicted

Phenotypic Enhancement

FSW = 0.0856

Unknown

APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1) ADENINE PHOSPHORIBOSYLTRANSFERASE
AT1G04750

Predicted

synthetic growth defect

FSW = 0.2338

Unknown

VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)
AT2G44690

Predicted

two hybrid

FSW = 0.0559

Unknown

ARAC9 GTP BINDING
AT4G14350

Predicted

Synthetic Rescue

Synthetic Lethality

FSW = 0.2503

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT1G21700

Predicted

synthetic growth defect

FSW = 0.2576

Unknown

ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING
AT1G06960

Predicted

Phenotypic Enhancement

FSW = 0.0603

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE
AT1G28460

Predicted

Phenotypic Suppression

FSW = 0.1053

Unknown

AGL59 (AGAMOUS-LIKE 59) DNA BINDING / TRANSCRIPTION FACTOR
AT5G65165

Predicted

two hybrid

FSW = 0.0166

Unknown

SDH2-3 ELECTRON CARRIER/ SUCCINATE DEHYDROGENASE
AT5G57625

Predicted

Affinity Capture-MS

FSW = 0.0100

Unknown

ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT4G33710

Predicted

Phenotypic Suppression

FSW = 0.0672

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT3G54840

Predicted

Phenotypic Enhancement

synthetic growth defect

FSW = 0.1621

Unknown

ARA6 GTP BINDING / GTPASE
AT3G60360

Predicted

Phenotypic Enhancement

FSW = 0.0375

Unknown

EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14)
AT1G62800

Predicted

Synthetic Lethality

FSW = 0.1987

Unknown

ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS
AT1G19730

Predicted

Phenotypic Enhancement

FSW = 0.1519

Unknown

ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR
AT1G05180

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.2249

Unknown

AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME
AT3G59600

Predicted

two hybrid

FSW = 0.0235

Unknown

NRPB8B DNA-DIRECTED RNA POLYMERASE
AT5G49310

Predicted

two hybrid

FSW = 0.0204

Unknown

IMPA-5 (IMPORTIN ALPHA ISOFORM 5) BINDING / PROTEIN TRANSPORTER
AT5G19000

Predicted

two hybrid

FSW = 0.0179

Unknown

ATBPM1 (BTB-POZ AND MATH DOMAIN 1) PROTEIN BINDING
AT1G10980

Predicted

Phenotypic Enhancement

FSW = 0.3064

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN VACUOLE EXPRESSED IN 8 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G616701) HAS 482 BLAST HITS TO 481 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 255 FUNGI - 99 PLANTS - 97 VIRUSES - 0 OTHER EUKARYOTES - 31 (SOURCE NCBI BLINK)
AT1G20693

Predicted

synthetic growth defect

synthetic growth defect

Phenotypic Enhancement

FSW = 0.1637

Unknown

HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT1G25155Predicted

synthetic growth defect

FSW = 0.1304

Unknown

ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT1G27320

Predicted

Phenotypic Enhancement

FSW = 0.0668

Unknown

AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE
AT1G35350

Predicted

synthetic growth defect

FSW = 0.3150

Unknown

LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK)
AT1G44180

Predicted

synthetic growth defect

FSW = 0.2158

Unknown

AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE
AT1G47830

Predicted

synthetic growth defect

Phenotypic Enhancement

synthetic growth defect

Phenotypic Enhancement

FSW = 0.2778

Unknown

CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE
AT1G66590

Predicted

Synthetic Rescue

Synthetic Rescue

Synthetic Rescue

two hybrid

FSW = 0.3533

Unknown

COX19 FAMILY PROTEIN
AT1G80710

Predicted

Phenotypic Suppression

FSW = 0.0384

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G02320

Predicted

Synthetic Lethality

FSW = 0.2013

Unknown

RNA BINDING / TRNA (GUANINE-N2-)-METHYLTRANSFERASE
AT3G22290

Predicted

synthetic growth defect

Synthetic Lethality

FSW = 0.2376

Unknown

UNKNOWN PROTEIN
AT3G25900

Predicted

synthetic growth defect

FSW = 0.2317

Unknown

HMT-1 HOMOCYSTEINE S-METHYLTRANSFERASE
AT4G10130

Predicted

Phenotypic Enhancement

FSW = 0.0941

Unknown

DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT4G21490

Predicted

synthetic growth defect

Synthetic Lethality

FSW = 0.3349

Unknown

NDB3 NADH DEHYDROGENASE
AT4G27130

Predicted

synthetic growth defect

Synthetic Lethality

FSW = 0.3107

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT4G29140

Predicted

Affinity Capture-MS

FSW = 0.0303

Unknown

MATE EFFLUX PROTEIN-RELATED
AT1G09810

Predicted

Phenotypic Suppression

FSW = 0.1330

Unknown

ECT11 (EVOLUTIONARILY CONSERVED C-TERMINAL REGION 11)
AT1G10210

Predicted

Phenotypic Enhancement

FSW = 0.0613

Unknown

ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE
AT1G11510

Predicted

synthetic growth defect

FSW = 0.2009

Unknown

DNA-BINDING STOREKEEPER PROTEIN-RELATED
AT1G29630

Predicted

synthetic growth defect

FSW = 0.0660

Unknown

NUCLEASE
AT3G45240

Predicted

Synthetic Lethality

FSW = 0.2485

Unknown

GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) KINASE
AT3G47290

Predicted

Phenotypic Enhancement

FSW = 0.2450

Unknown

PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
AT4G14000

Predicted

Phenotypic Enhancement

FSW = 0.1176

Unknown

UNKNOWN PROTEIN
AT4G34370

Predicted

Phenotypic Enhancement

FSW = 0.1216

Unknown

ARI1 (ARIADNE) PROTEIN BINDING / ZINC ION BINDING
AT4G38250

Predicted

Phenotypic Suppression

FSW = 0.0546

Unknown

AMINO ACID TRANSPORTER FAMILY PROTEIN
AT5G01770

Predicted

Phenotypic Enhancement

two hybrid

two hybrid

Phenotypic Enhancement

interologs mapping

Synthetic Rescue

FSW = 0.3135

Unknown

RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING
AT5G04800

Predicted

Phenotypic Enhancement

FSW = 0.0985

Unknown

40S RIBOSOMAL PROTEIN S17 (RPS17D)
AT5G11500

Predicted

synthetic growth defect

synthetic growth defect

synthetic growth defect

Phenotypic Enhancement

FSW = 0.1623

Unknown

UNKNOWN PROTEIN
AT5G16170

Predicted

Synthetic Lethality

synthetic growth defect

Phenotypic Enhancement

FSW = 0.2562

Unknown

UNKNOWN PROTEIN
AT5G16980

Predicted

synthetic growth defect

FSW = 0.3300

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G17860

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.3001

Unknown

CAX7 (CALCIUM EXCHANGER 7) CALCIUMSODIUM ANTIPORTER/ CATIONCATION ANTIPORTER
AT5G45620

Predicted

synthetic growth defect

FSW = 0.1672

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9)
ATCG00905Predicted

two hybrid

two hybrid

two hybrid

Affinity Capture-Western

FSW = 0.1565

Unknown

CHLOROPLAST GENE ENCODING RIBOSOMAL PROTEIN S12 THE GENE IS LOCATED IN THREE DISTINCT LOCI ON THE CHLOROPLAST GENOME AND IS TRANSPLICED TO MAKE ONE TRANSCRIPT

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454