Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G29910 - ( ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) protein binding )
63 Proteins interacs with AT4G29910Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G26840 | Experimentalpull downcoimmunoprecipitation | FSW = 0.1315
| Unknown | ORC6 (ORIGIN RECOGNITION COMPLEX PROTEIN 6) DNA BINDING |
AT2G37560 | Experimentalcoimmunoprecipitationpull down | FSW = 0.1241
| Unknown | ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING |
AT5G16690 | Experimentalpull downcoimmunoprecipitation | FSW = 0.2004
| Unknown | ORC3 (ORIGIN RECOGNITION COMPLEX SUBUNIT 3) PROTEIN BINDING |
AT4G12620 | Experimentalcoimmunoprecipitationpull down | FSW = 0.1115
| Unknown | ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) DNA BINDING / DOUBLE-STRANDED METHYLATED DNA BINDING / PROTEIN BINDING |
AT2G01120 | Experimentalcoimmunoprecipitation | FSW = 0.2439
| Unknown | ORC4 (ORIGIN RECOGNITION COMPLEX SUBUNIT 4) PROTEIN BINDING |
AT4G14700 | Experimentalcoimmunoprecipitation | FSW = 0.1035
| Unknown | ORC1A (ORIGIN RECOGNITION COMPLEX 1) DNA BINDING / DOUBLE-STRANDED METHYLATED DNA BINDING |
AT5G15090 | PredictedAffinity Capture-MS | FSW = 0.0072
| Unknown | VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL |
AT3G01280 | PredictedAffinity Capture-MS | FSW = 0.2683
| Unknown | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
AT1G14010 | PredictedAffinity Capture-MS | FSW = 0.3426
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT3G59280 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0827
| Unknown | TXR1 (THAXTOMIN A RESISTANT 1) |
AT2G04940 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2133
| Unknown | SCRAMBLASE-RELATED |
AT3G09820 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.4766
| Unknown | ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING |
AT5G64270 | PredictedAffinity Capture-MS | FSW = 0.0165
| Unknown | SPLICING FACTOR PUTATIVE |
AT3G54660 | PredictedAffinity Capture-MS | FSW = 0.1744
| Unknown | GR (GLUTATHIONE REDUCTASE) ATP BINDING / GLUTATHIONE-DISULFIDE REDUCTASE |
AT5G15450 | PredictedAffinity Capture-MS | FSW = 0.1228
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G18870 | PredictedAffinity Capture-MS | FSW = 0.2432
| Unknown | ICS2 (ISOCHORISMATE SYNTHASE 2) ISOCHORISMATE SYNTHASE |
AT3G61430 | PredictedAffinity Capture-MS | FSW = 0.0300
| Unknown | PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL |
AT4G08690 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3987
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT1G79450 | PredictedAffinity Capture-MS | FSW = 0.0708
| Unknown | ALIS5 (ALA-INTERACTING SUBUNIT 5) |
AT1G63110 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2591
| Unknown | CELL DIVISION CYCLE PROTEIN-RELATED |
AT5G45380 | PredictedAffinity Capture-MS | FSW = 0.3475
| Unknown | SODIUMSOLUTE SYMPORTER FAMILY PROTEIN |
AT3G46900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.4583
| Unknown | COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
AT2G30260 | PredictedAffinity Capture-MS | FSW = 0.0406
| Unknown | U2B (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT2G24490 | Predictedtwo hybrid | FSW = 0.0435
| Unknown | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
AT3G02920 | Predictedtwo hybrid | FSW = 0.0961
| Unknown | REPLICATION PROTEIN-RELATED |
AT5G59960 | PredictedAffinity Capture-MS | FSW = 0.4698
| Unknown | UNKNOWN PROTEIN |
AT4G26600 | PredictedAffinity Capture-MS | FSW = 0.0256
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT1G44900 | Predictedtwo hybridCo-expression | FSW = 0.1132
| Unknown | ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE |
AT1G06960 | PredictedAffinity Capture-MS | FSW = 0.0866
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE |
AT4G02060 | Predictedtwo hybridCo-expression | FSW = 0.1373
| Unknown | PRL (PROLIFERA) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT1G30810 | PredictedAffinity Capture-MS | FSW = 0.4343
| Unknown | TRANSCRIPTION FACTOR |
AT3G08980 | PredictedAffinity Capture-MS | FSW = 0.3967
| Unknown | SIGNAL PEPTIDASE I FAMILY PROTEIN |
AT4G33720 | PredictedAffinity Capture-MS | FSW = 0.0279
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT1G76400 | PredictedAffinity Capture-MS | FSW = 0.0355
| Unknown | RIBOPHORIN I FAMILY PROTEIN |
AT4G35640 | PredictedAffinity Capture-MS | FSW = 0.1226
| Unknown | ATSERAT32 (SERINE ACETYLTRANSFERASE 32) ACETYLTRANSFERASE/ SERINE O-ACETYLTRANSFERASE |
AT3G51300 | PredictedAffinity Capture-MS | FSW = 0.0157
| Unknown | ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1) GTP BINDING / GTPASE ACTIVATING PROTEIN BINDING / GTPASE/ PROTEIN BINDING |
AT4G17190 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1574
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT2G16440 | Predictedtwo hybrid | FSW = 0.1895
| Unknown | DNA REPLICATION LICENSING FACTOR PUTATIVE |
AT5G46280 | Predictedtwo hybridCo-expression | FSW = 0.1041
| Unknown | DNA REPLICATION LICENSING FACTOR PUTATIVE |
AT1G54290 | PredictedAffinity Capture-MS | FSW = 0.0300
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT2G16740 | PredictedAffinity Capture-MS | FSW = 0.0477
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G20410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4718
| Unknown | ACTIVATING SIGNAL COINTEGRATOR-RELATED |
AT2G29680 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybridtwo hybridAffinity Capture-MSAffinity Capture-MSinterologs mappingReconstituted Complex | FSW = 0.5892
| Unknown | CDC6 (CELL DIVISION CONTROL 6) |
AT3G52590 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3475
| Unknown | UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G53880 | PredictedAffinity Capture-WesternCo-purification | FSW = 0.3575
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT1G05830 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3287
| Unknown | ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2) DNA BINDING / HISTONE METHYLTRANSFERASE(H3-K4 SPECIFIC) |
AT1G06790 | PredictedAffinity Capture-MS | FSW = 0.3196
| Unknown | RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT1G10350 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2965
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT1G18550 | PredictedAffinity Capture-MS | FSW = 0.1931
| Unknown | ATP BINDING / MICROTUBULE MOTOR |
AT1G21370 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.2047
| Unknown | UNKNOWN PROTEIN |
AT1G74250 | PredictedAffinity Capture-MS | FSW = 0.4606
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT2G29940 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5175
| Unknown | PDR3 (PLEIOTROPIC DRUG RESISTANCE 3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT3G05760 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3613
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
AT4G00810 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3918
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1B) |
AT4G31770 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5401
| Unknown | CALCINEURIN-LIKE PHOSPHOESTERASE FAMILY PROTEIN |
AT5G16960 | PredictedAffinity Capture-MS | FSW = 0.3630
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G49970 | PredictedAffinity Capture-MS | FSW = 0.1477
| Unknown | ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE |
AT5G59890 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2627
| Unknown | ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) ACTIN BINDING |
AT5G06420 | PredictedAffinity Capture-MS | FSW = 0.0325
| Unknown | ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT5G19510 | PredictedAffinity Capture-Western | FSW = 0.0223
| Unknown | ELONGATION FACTOR 1B ALPHA-SUBUNIT 2 (EEF1BALPHA2) |
AT1G07270 | PredictedReconstituted Complex | FSW = 0.0896
| Unknown | CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B) |
AT5G48600 | Predictedinterologs mapping | FSW = 0.0471
| Unknown | ATSMC3 (ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 3) ATP BINDING / TRANSPORTER |
AT5G62410 | Predictedinterologs mapping | FSW = 0.0523
| Unknown | SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2) TRANSPORTER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454