Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G30000 - ( dihydropterin pyrophosphokinase putative / dihydropteroate synthase putative / DHPS putative )

6 Proteins interacs with AT4G30000
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G63400

Predicted

Affinity Capture-MS

FSW = 0.0473

Unknown

ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR
AT4G33090

Predicted

Affinity Capture-MS

FSW = 0.0308

Unknown

APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE
AT2G41500

Predicted

Gene fusion method

FSW = 0.0254

Unknown

EMB2776 NUCLEOTIDE BINDING
AT4G18880

Predicted

Affinity Capture-MS

FSW = 0.0229

Unknown

AT-HSFA4A DNA BINDING / TRANSCRIPTION FACTOR
AT4G22756

Predicted

Affinity Capture-MS

FSW = 0.0552

Unknown

SMO1-2 (STEROL C4-METHYL OXIDASE 1-2) 44-DIMETHYL-9BETA19-CYCLOPROPYLSTEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE/ CATALYTIC
AT1G69190

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0697

Unknown

2-AMINO-4-HYDROXY-6-HYDROXYMETHYLDIHYDROPTERIDINE DIPHOSPHOKINASE/ DIHYDROPTEROATE SYNTHASE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454