Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G30330 - ( small nuclear ribonucleoprotein E putative / snRNP-E putative / Sm protein E putative )
43 Proteins interacs with AT4G30330| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT4G02840
   | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5490
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE |
| AT1G20960
| PredictedCo-purificationCo-purificationAffinity Capture-MS | FSW = 0.4307
| Class C:nucleus | EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT1G09760
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3895
| Class C:nucleus | U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING |
| AT5G64270
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2979
| Class C:nucleus | SPLICING FACTOR PUTATIVE |
| AT1G09770
| PredictedAffinity Capture-MS | FSW = 0.2688
| Class C:nucleus | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR |
| AT2G23930
| PredictedAffinity Capture-MStwo hybridtwo hybridin vitroAffinity Capture-MSin vitrotwo hybrid | FSW = 0.5176
| Class C:nucleus | SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) |
| AT3G11500
| Predictedtwo hybridin vitroAffinity Capture-MSin vitrotwo hybrid | FSW = 0.4877
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN G PUTATIVE / SNRNP-G PUTATIVE / SM PROTEIN G PUTATIVE |
| AT5G27720
| Predictedtwo hybridAffinity Capture-MS | FSW = 0.2305
| Class C:nucleus | EMB1644 (EMBRYO DEFECTIVE 1644) |
| AT1G21190
| PredictedAffinity Capture-MStwo hybrid | FSW = 0.2547
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT1G76860
| Predictedtwo hybridAffinity Capture-MStwo hybrid | FSW = 0.3576
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT1G03330
| Predictedtwo hybrid | FSW = 0.3016
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE |
| AT2G18740
| PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.5986
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE |
| AT2G47640
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3518
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
| AT3G50670
| PredictedAffinity Capture-MS | FSW = 0.1177
| Class C:nucleus | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT3G19840
| PredictedAffinity Capture-MSSynthetic LethalityAffinity Capture-MS | FSW = 0.2501
| Class C:nucleus | FF DOMAIN-CONTAINING PROTEIN / WW DOMAIN-CONTAINING PROTEIN |
| AT1G20580
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.5185
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT1G28060
| PredictedAffinity Capture-MS | FSW = 0.3899
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN |
| AT2G03870
| Predictedtwo hybridtwo hybridCo-expression | FSW = 0.1908
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT4G30220
| Predictedtwo hybridAffinity Capture-MStwo hybridtwo hybridtwo hybridtwo hybridin vitrotwo hybridin vitroAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4599
| Class C:nucleus | RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) |
| AT5G48870
| Predictedtwo hybridAffinity Capture-MS | FSW = 0.3074
| Class C:nucleus | SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) RNA BINDING |
| AT2G41500
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3896
| Class C:nucleus | EMB2776 NUCLEOTIDE BINDING |
| AT3G26590
| PredictedAffinity Capture-MS | FSW = 0.0048
| Unknown | MATE EFFLUX FAMILY PROTEIN |
| AT2G33340
| PredictedCo-purification | FSW = 0.2775
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT3G18790
| PredictedAffinity Capture-MS | FSW = 0.0801
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ISY1-LIKE SPLICING (INTERPROIPR009360) HAS 1075 BLAST HITS TO 879 PROTEINS IN 176 SPECIES ARCHAE - 8 BACTERIA - 11 METAZOA - 379 FUNGI - 177 PLANTS - 27 VIRUSES - 9 OTHER EUKARYOTES - 464 (SOURCE NCBI BLINK) |
| AT1G80070
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3872
| Unknown | SUS2 (ABNORMAL SUSPENSOR 2) |
| AT3G55200 | Predictedinteraction prediction | FSW = 0.2709
| Unknown | SPLICING FACTOR PUTATIVE |
| AT4G38740
| Predictedtwo hybrid | FSW = 0.0139
| Unknown | ROC1 (ROTAMASE CYP 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
| AT2G21130
| Predictedtwo hybrid | FSW = 0.0479
| Unknown | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE / CYCLOPHILIN (CYP2) / ROTAMASE |
| AT1G50110
| PredictedAffinity Capture-MS | FSW = 0.0239
| Unknown | BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 6 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 6 (BCAT6) |
| AT1G61040
| Predictedtwo hybridtwo hybrid | FSW = 0.0088
| Unknown | VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING |
| AT5G62290
| PredictedAffinity Capture-Western | FSW = 0.0437
| Unknown | NUCLEOTIDE-SENSITIVE CHLORIDE CONDUCTANCE REGULATOR (ICLN) FAMILY PROTEIN |
| AT3G55220
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4156
| Unknown | SPLICING FACTOR PUTATIVE |
| AT4G03430
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2994
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
| AT1G15440
| PredictedAffinity Capture-MS | FSW = 0.0036
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G60170
| PredictedAffinity Capture-MS | FSW = 0.4910
| Unknown | EMB1220 (EMBRYO DEFECTIVE 1220) |
| AT1G60730
| Predictedinterologs mappingco-fractionationCo-fractionationPhenotypic Suppression | FSW = 0.0061
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
| AT2G31020
| PredictedAffinity Capture-MS | FSW = 0.0076
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
| AT2G32170
| PredictedAffinity Capture-MS | FSW = 0.0952
| Unknown | LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S N2227-LIKE (INTERPROIPR012901) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G321603) HAS 362 BLAST HITS TO 319 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 132 FUNGI - 130 PLANTS - 25 VIRUSES - 0 OTHER EUKARYOTES - 75 (SOURCE NCBI BLINK) |
| AT2G47090
| PredictedAffinity Capture-MS | FSW = 0.0143
| Unknown | NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
| AT5G12030
| PredictedAffinity Capture-MS | FSW = 0.0224
| Unknown | AT-HSP176A (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 176A) UNFOLDED PROTEIN BINDING |
| AT5G41770
| PredictedAffinity Capture-MS | FSW = 0.3096
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
| AT5G06160
| PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3605
| Unknown | ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING |
| AT4G31790
| Predictedinteraction predictionCo-expression | FSW = 0.0696
| Unknown | DIPHTHINE SYNTHASE PUTATIVE (DPH5) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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