Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G30510 - ( AtATG18b )

14 Proteins interacs with AT4G30510
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G33120

Predicted

Affinity Capture-MS

FSW = 0.0432

Unknown

SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1)
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0119

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT3G19980

Predicted

interaction prediction

FSW = 0.0213

Unknown

ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G16630

Predicted

two hybrid

interaction prediction

FSW = 0.0181

Unknown

RAD4 DAMAGED DNA BINDING
AT1G22940

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0627

Unknown

TH1 (THIAMINE REQUIRING 1) HYDROXYMETHYLPYRIMIDINE KINASE/ PHOSPHOMETHYLPYRIMIDINE KINASE/ THIAMIN-PHOSPHATE DIPHOSPHORYLASE
AT1G10900

Predicted

Synthetic Lethality

FSW = 0.0362

Unknown

PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN
AT3G12280

Predicted

Phenotypic Enhancement

FSW = 0.0033

Unknown

RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING
AT1G71010

Predicted

Phenotypic Enhancement

Affinity Capture-MS

two hybrid

FSW = 0.0800

Unknown

PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN
AT1G68530

Predicted

Affinity Capture-MS

FSW = 0.0556

Unknown

KCS6 (3-KETOACYL-COA SYNTHASE 6) CATALYTIC/ TRANSFERASE TRANSFERRING ACYL GROUPS OTHER THAN AMINO-ACYL GROUPS
AT3G56120

Predicted

Affinity Capture-MS

FSW = 0.0672

Unknown

MET-10+ LIKE FAMILY PROTEIN
AT5G16750

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0233

Unknown

TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING
AT1G17720

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0188

Unknown

ATB BETA NUCLEOTIDE BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT1G50370

Predicted

Affinity Capture-MS

FSW = 0.0758

Unknown

SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE
AT2G31260

Predicted

Affinity Capture-Western

FSW = 0.0222

Unknown

APG9 (AUTOPHAGY 9)

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454