Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G30540 - ( glutamine amidotransferase class-I domain-containing protein )
24 Proteins interacs with AT4G30540Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G09590 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0263
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT1G15880 | PredictedSynthetic Lethality | FSW = 0.1852
| Unknown | GOS11 (GOLGI SNARE 11) SNARE BINDING |
AT4G09720 | PredictedSynthetic Lethality | FSW = 0.1032
| Unknown | RAS-RELATED GTP-BINDING PROTEIN PUTATIVE |
AT5G64960 | PredictedSynthetic Lethality | FSW = 0.0714
| Unknown | CDKC2 (CYCLIN DEPENDENT KINASE GROUP C 2) KINASE |
AT1G16030 | PredictedSynthetic Lethality | FSW = 0.0117
| Unknown | HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING |
AT5G09660 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0282
| Unknown | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
AT1G21640 | Predictedinterologs mapping | FSW = 0.0080
| Unknown | NADK2 NAD+ KINASE/ CALMODULIN BINDING |
AT5G03650 | PredictedSynthetic Lethality | FSW = 0.0424
| Unknown | SBE22 (STARCH BRANCHING ENZYME 22) 14-ALPHA-GLUCAN BRANCHING ENZYME |
AT1G71860 | PredictedSynthetic RescuePhenotypic Suppression | FSW = 0.0179
| Unknown | PTP1 (PROTEIN TYROSINE PHOSPHATASE 1) PROTEIN TYROSINE PHOSPHATASE |
AT1G02780 | PredictedAffinity Capture-MS | FSW = 0.0214
| Unknown | EMB2386 (EMBRYO DEFECTIVE 2386) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G70730 | PredictedSynthetic Lethality | FSW = 0.2424
| Unknown | PHOSPHOGLUCOMUTASE CYTOPLASMIC PUTATIVE / GLUCOSE PHOSPHOMUTASE PUTATIVE |
AT4G30550 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0847
| Unknown | GLUTAMINE AMIDOTRANSFERASE CLASS-I DOMAIN-CONTAINING PROTEIN |
AT1G76300 | PredictedSynthetic Lethality | FSW = 0.0494
| Unknown | SMD3 (SNRNP CORE PROTEIN SMD3) |
AT4G25210 | Predictedinterologs mapping | FSW = 0.0756
| Unknown | TRANSCRIPTION REGULATOR |
AT1G57550 | PredictedSynthetic Lethality | FSW = 0.1494
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
AT1G33040 | PredictedSynthetic Lethality | FSW = 0.1361
| Unknown | NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5) |
AT1G34580 | PredictedSynthetic Lethality | FSW = 0.0529
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT2G47090 | PredictedSynthetic Lethalityinterologs mappingSynthetic Lethality | FSW = 0.0237
| Unknown | NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT3G05960 | PredictedSynthetic Lethality | FSW = 0.0162
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G18860 | PredictedSynthetic Lethality | FSW = 0.0163
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G24830 | PredictedSynthetic Lethality | FSW = 0.0699
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AB) |
AT1G60730 | PredictedPhenotypic Enhancement | FSW = 0.0374
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT2G38490 | PredictedPhenotypic Enhancement | FSW = 0.0274
| Unknown | CIPK22 (CBL-INTERACTING PROTEIN KINASE 22) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT5G14070 | PredictedSynthetic Lethality | FSW = 0.1852
| Unknown | ROXY2 ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454