Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G30690 - ( translation initiation factor 3 (IF-3) family protein )

35 Proteins interacs with AT4G30690
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G33800

Predicted

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FSW = 0.3158

Class C:

plastid

 RIBOSOMAL PROTEIN S5 FAMILY PROTEIN
AT3G17170

Predicted

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FSW = 0.0813

Class C:

plastid

 RFC3 (REGULATOR OF FATTY-ACID COMPOSITION 3) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G13120

Predicted

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FSW = 0.0356

Class C:

plastid

 30S RIBOSOMAL PROTEIN S10 CHLOROPLAST PUTATIVE
AT3G27850

Predicted

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FSW = 0.0205

Class C:

plastid

 RPL12-C (RIBOSOMAL PROTEIN L12-C) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G14320

Predicted

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FSW = 0.1373

Class C:

plastid

 30S RIBOSOMAL PROTEIN S13 CHLOROPLAST (CS13)
AT4G34620

Predicted

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FSW = 0.1812

Class C:

plastid

 SSR16 (SMALL SUBUNIT RIBOSOMAL PROTEIN 16) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G10670

Predicted

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FSW = 0.0351

Class C:

plastid

 ATNAP7 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTEIN BINDING / TRANSPORTER
AT3G44890

Predicted

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FSW = 0.0659

Class C:

plastid

 RPL9 (RIBOSOMAL PROTEIN L9) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G01310

Predicted

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FSW = 0.1036

Class C:

plastid

 RIBOSOMAL PROTEIN L5 FAMILY PROTEIN
AT5G30510

Predicted

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FSW = 0.1385

Class C:

plastid

 RPS1 (RIBOSOMAL PROTEIN S1) RNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G24240

Predicted

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FSW = 0.0372

Class C:

plastid

 RIBOSOMAL PROTEIN L19 FAMILY PROTEIN
AT1G32990

Predicted

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FSW = 0.1711

Class C:

plastid

 PRPL11 (PLASTID RIBOSOMAL PROTEIN L11) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G78630

Predicted

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FSW = 0.2385

Class C:

plastid

 EMB1473 (EMBRYO DEFECTIVE 1473) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G43030

Predicted

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FSW = 0.0353

Class C:

plastid

 RIBOSOMAL PROTEIN L3 FAMILY PROTEIN
AT4G01800

Predicted

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FSW = 0.1470

Class C:

plastid

 PREPROTEIN TRANSLOCASE SECA SUBUNIT PUTATIVE
ATCG00160Predicted

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FSW = 0.0976

Class C:

plastid

 CHLOROPLAST RIBOSOMAL PROTEIN S2
ATCG00330Predicted

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FSW = 0.1039

Class C:

plastid

 30S CHLOROPLAST RIBOSOMAL PROTEIN S14
ATCG00380Predicted

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FSW = 0.2317

Class C:

plastid

 CHLOROPLAST ENCODED RIBOSOMAL PROTEIN S4
ATCG00750Predicted

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FSW = 0.0880

Class C:

plastid

 30S CHLOROPLAST RIBOSOMAL PROTEIN S11
ATCG00770Predicted

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FSW = 0.1355

Class C:

plastid

 CHLOROPLAST 30S RIBOSOMAL PROTEIN S8
ATCG00790Predicted

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FSW = 0.1636

Class C:

plastid

 CHLOROPLAST GENE ENCODING A RIBOSOMAL PROTEIN L16 WHICH IS A CONSTITUENT OF 50S LARGE RIBOSOMAL SUBUNIT
ATCG00800Predicted

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FSW = 0.2148

Class C:

plastid

 ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN S3 A CONSTITUENT OF THE SMALL SUBUNIT OF THE RIBOSOMAL COMPLEX
ATCG00810Predicted

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FSW = 0.0623

Class C:

plastid

 ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L22 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX
ATCG00820Predicted

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FSW = 0.2530

Class C:

plastid

 ENCODES A 68-KDA PROTEIN OF THE SMALL RIBOSOMAL SUBUNIT
ATCG00830Predicted

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FSW = 0.2344

Class C:

plastid

 ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L2 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX
ATCG01240Predicted

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FSW = 0.1623

Class C:

plastid

 30S CHLOROPLAST RIBOSOMAL PROTEIN S7
AT4G30930

Predicted

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FSW = 0.0697

Unknown

 NFD1 (NUCLEAR FUSION DEFECTIVE 1) RNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G16740

Predicted

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FSW = 0.0839

Unknown

 RIBOSOMAL PROTEIN L20 FAMILY PROTEIN
AT1G80620

Predicted

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FSW = 0.2645

Unknown

 RIBOSOMAL PROTEIN S15 FAMILY PROTEIN
AT2G20060

Predicted

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FSW = 0.2915

Unknown

 RIBOSOMAL PROTEIN L4 FAMILY PROTEIN
AT3G49080

Predicted

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FSW = 0.2451

Unknown

 RIBOSOMAL PROTEIN S9 FAMILY PROTEIN
AT2G17510

Predicted

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FSW = 0.5382

Unknown

 EMB2763 (EMBRYO DEFECTIVE 2763) RNA BINDING / RIBONUCLEASE
AT5G11650

Predicted

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FSW = 0.0504

Unknown

 HYDROLASE ALPHA/BETA FOLD FAMILY PROTEIN
AT5G23535

Predicted

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FSW = 0.0593

Unknown

 KOW DOMAIN-CONTAINING PROTEIN
AT5G64670

Predicted

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FSW = 0.1125

Unknown

 RIBOSOMAL PROTEIN L15 FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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