Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT4G30820 - ( cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related )
25 Proteins interacs with AT4G30820Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G66750 | ExperimentalAffinity Capture-MSaffinity technology | FSW = 0.0768
| Unknown | CAK4 (CDK-ACTIVATING KINASE 4) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE |
AT3G56070 | Experimentalprotein array | FSW = 0.0301
| Unknown | ROC2 (ROTAMASE CYCLOPHILIN 2) CYCLOSPORIN A BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT3G08710 | Predictedtwo hybrid | FSW = 0.0453
| Unknown | ATH9 (THIOREDOXIN H-TYPE 9) |
AT3G07100 | Predictedtwo hybrid | FSW = 0.1453
| Unknown | PROTEIN TRANSPORT PROTEIN SEC24 PUTATIVE |
AT3G45770 | Predictedtwo hybrid | FSW = 0.1949
| Unknown | OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN |
AT5G65430 | PredictedPhenotypic Suppression | FSW = 0.0244
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT2G42590 | Predictedtwo hybrid | FSW = 0.1277
| Unknown | GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT4G15000 | Predictedtwo hybrid | FSW = 0.0437
| Unknown | 60S RIBOSOMAL PROTEIN L27 (RPL27C) |
AT5G41370 | PredictedAffinity Capture-MSCo-purificationin vivoin vitro | FSW = 0.0701
| Unknown | XPB1 (ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE/ NUCLEIC ACID BINDING |
AT4G21010 | Predictedin vitro | FSW = 0.0577
| Unknown | TRANSCRIPTION INITIATION FACTOR-RELATED |
AT2G34450 | Predictedtwo hybrid | FSW = 0.0448
| Unknown | HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN |
AT4G02060 | Predictedin vivoin vitrotwo hybridAffinity Capture-MS | FSW = 0.0787
| Unknown | PRL (PROLIFERA) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT1G10060 | Predictedtwo hybrid | FSW = 0.1234
| Unknown | BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 1 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (BCAT1) |
AT1G70190 | Predictedtwo hybrid | FSW = 0.3175
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
AT2G18230 | Predictedtwo hybrid | FSW = 0.0091
| Unknown | ATPPA2 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 2) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT4G15900 | Predictedtwo hybrid | FSW = 0.1433
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT3G12280 | PredictedAffinity Capture-MSin vitroin vivo | FSW = 0.0043
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT5G27620 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.0634
| Unknown | CYCH1 (CYCLIN H1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT1G07880 | Predictedtwo hybrid | FSW = 0.0928
| Unknown | ATMPK13 MAP KINASE/ KINASE |
AT3G05040 | Predictedtwo hybrid | FSW = 0.1466
| Unknown | HST (HASTY) NUCLEOCYTOPLASMIC TRANSPORTER |
AT3G63120 | PredictedPhenotypic Enhancement | FSW = 0.0635
| Unknown | CYCP11 (CYCLIN P11) CYCLIN-DEPENDENT PROTEIN KINASE |
AT1G68310 | PredictedAffinity Capture-MS | FSW = 0.0388
| Unknown | VACUOLAR SORTING SIGNAL BINDING |
AT2G46650 | Predictedtwo hybrid | FSW = 0.2844
| Unknown | CB5-C (CYTOCHROME B5 ISOFORM C) HEME BINDING |
AT5G38110 | Predictedtwo hybrid | FSW = 0.1852
| Unknown | ASF1B (ANTI- SILENCING FUNCTION 1B) |
AT5G52210 | Predictedtwo hybrid | FSW = 0.0213
| Unknown | ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454