Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G30860 - ( SDG4 (SET DOMAIN GROUP 4) histone methyltransferase )
24 Proteins interacs with AT4G30860Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G45490 | PredictedSynthetic Rescue | FSW = 0.0860
| Class C:nucleus | ATAUR3 (ATAURORA3) ATP BINDING / HISTONE KINASE(H3-S10 SPECIFIC) / PROTEIN KINASE |
AT4G10710 | Predictedsynthetic growth defect | FSW = 0.1176
| Class C:nucleus | SPT16 (GLOBAL TRANSCRIPTION FACTOR C) |
AT5G61760 | Predictedtwo hybrid | FSW = 0.0368
| Class C:nucleus | ATIPK2BETA INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ INOSITOL TRISPHOSPHATE 6-KINASE |
AT2G13370 | PredictedSynthetic Rescue | FSW = 0.0163
| Class C:nucleus | CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT4G20400 | PredictedColocalization | FSW = 0.0817
| Class C:nucleus | TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN |
AT2G06210 | PredictedAffinity Capture-Western | FSW = 0.0307
| Class C:nucleus | ELF8 (EARLY FLOWERING 8) BINDING |
AT5G61790 | Predictedtwo hybrid | FSW = 0.0160
| Unknown | CALNEXIN 1 (CNX1) |
AT4G35800 | PredictedAffinity Capture-Western | FSW = 0.0148
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G19990 | PredictedSynthetic Lethality | FSW = 0.0113
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
AT4G10040 | Predictedtwo hybrid | FSW = 0.0314
| Unknown | CYTC-2 (CYTOCHROME C-2) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING |
AT5G02730 | Predictedtwo hybrid | FSW = 0.0067
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT5G66130 | PredictedSynthetic Rescue | FSW = 0.0141
| Unknown | ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) |
AT5G40820 | PredictedSynthetic Rescue | FSW = 0.0185
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
AT5G17650 | Predictedtwo hybrid | FSW = 0.0334
| Unknown | GLYCINE/PROLINE-RICH PROTEIN |
AT2G39840 | PredictedSynthetic Lethality | FSW = 0.0330
| Unknown | TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G21060 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.0560
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G52740 | Predictedsynthetic growth defect | FSW = 0.0403
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT3G24010 | PredictedSynthetic Rescue | FSW = 0.0256
| Unknown | ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT4G31120 | PredictedSynthetic Lethality | FSW = 0.0536
| Unknown | SKB1 (SHK1 BINDING PROTEIN 1) PROTEIN METHYLTRANSFERASE |
AT5G14530 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.0441
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G19680 | PredictedSynthetic Lethality | FSW = 0.0649
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
AT5G56740 | PredictedAffinity Capture-MS | FSW = 0.0460
| Unknown | HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2) H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT5G10390 | Predictedbiochemical | FSW = 0.1176
| Unknown | HISTONE H3 |
AT5G10400 | Predictedbiochemical | FSW = 0.1242
| Unknown | HISTONE H3 |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454