Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G31460 - ( ribosomal protein L28 family protein )
14 Proteins interacs with AT4G31460Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G17465 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5614
| Class C:mitochondrion | RPL3P (RIBOSOMAL PROTEIN L3 PLASTID) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G65540 | PredictedAffinity Capture-MS | FSW = 0.3180
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT3G63490 | PredictedAffinity Capture-MS | FSW = 0.2667
| Unknown | RIBOSOMAL PROTEIN L1 FAMILY PROTEIN |
AT5G40950 | PredictedAffinity Capture-MS | FSW = 0.5319
| Unknown | RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G01310 | PredictedAffinity Capture-MS | FSW = 0.3878
| Unknown | RIBOSOMAL PROTEIN L5 FAMILY PROTEIN |
AT1G05190 | PredictedAffinity Capture-MS | FSW = 0.3404
| Unknown | EMB2394 (EMBRYO DEFECTIVE 2394) STRUCTURAL CONSTITUENT OF RIBOSOME |
ATCG00790 | PredictedAffinity Capture-MS | FSW = 0.3556
| Unknown | CHLOROPLAST GENE ENCODING A RIBOSOMAL PROTEIN L16 WHICH IS A CONSTITUENT OF 50S LARGE RIBOSOMAL SUBUNIT |
ATCG00830 | PredictedAffinity Capture-MS | FSW = 0.0431
| Unknown | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L2 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX |
AT3G10330 | Predictedtwo hybrid | FSW = 0.0138
| Unknown | TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2) |
AT1G14620 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.6882
| Unknown | DECOY (DECOY) |
AT1G07830 | PredictedAffinity Capture-MS | FSW = 0.5614
| Unknown | RIBOSOMAL PROTEIN L29 FAMILY PROTEIN |
AT5G38890 | PredictedAffinity Capture-MS | FSW = 0.0086
| Unknown | EXORIBONUCLEASE-RELATED |
AT5G64650 | PredictedAffinity Capture-MS | FSW = 0.2698
| Unknown | RIBOSOMAL PROTEIN L17 FAMILY PROTEIN |
AT5G64670 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3184
| Unknown | RIBOSOMAL PROTEIN L15 FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454