Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G31460 - ( ribosomal protein L28 family protein )

14 Proteins interacs with AT4G31460
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G17465

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5614

Class C:

mitochondrion

RPL3P (RIBOSOMAL PROTEIN L3 PLASTID) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G65540

Predicted

Affinity Capture-MS

FSW = 0.3180

Unknown

CALCIUM-BINDING EF HAND FAMILY PROTEIN
AT3G63490

Predicted

Affinity Capture-MS

FSW = 0.2667

Unknown

RIBOSOMAL PROTEIN L1 FAMILY PROTEIN
AT5G40950

Predicted

Affinity Capture-MS

FSW = 0.5319

Unknown

RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G01310

Predicted

Affinity Capture-MS

FSW = 0.3878

Unknown

RIBOSOMAL PROTEIN L5 FAMILY PROTEIN
AT1G05190

Predicted

Affinity Capture-MS

FSW = 0.3404

Unknown

EMB2394 (EMBRYO DEFECTIVE 2394) STRUCTURAL CONSTITUENT OF RIBOSOME
ATCG00790Predicted

Affinity Capture-MS

FSW = 0.3556

Unknown

CHLOROPLAST GENE ENCODING A RIBOSOMAL PROTEIN L16 WHICH IS A CONSTITUENT OF 50S LARGE RIBOSOMAL SUBUNIT
ATCG00830Predicted

Affinity Capture-MS

FSW = 0.0431

Unknown

ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L2 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX
AT3G10330

Predicted

two hybrid

FSW = 0.0138

Unknown

TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2)
AT1G14620

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.6882

Unknown

DECOY (DECOY)
AT1G07830

Predicted

Affinity Capture-MS

FSW = 0.5614

Unknown

RIBOSOMAL PROTEIN L29 FAMILY PROTEIN
AT5G38890

Predicted

Affinity Capture-MS

FSW = 0.0086

Unknown

EXORIBONUCLEASE-RELATED
AT5G64650

Predicted

Affinity Capture-MS

FSW = 0.2698

Unknown

RIBOSOMAL PROTEIN L17 FAMILY PROTEIN
AT5G64670

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3184

Unknown

RIBOSOMAL PROTEIN L15 FAMILY PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454