Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G31490 - ( coatomer beta subunit putative / beta-coat protein putative / beta-COP putative )
17 Proteins interacs with AT4G31490Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G01900 | Experimentalpull down | FSW = 0.1890
| Class B:vacuoleplastidgolgi | GLB1 (GLNB1 HOMOLOG) ACETYLGLUTAMATE KINASE REGULATOR |
AT2G01950 | Experimentalphage display | FSW = 0.0119
| Class D:cytosol (p = 0.67) | BRL2 (BRI1-LIKE 2) ATP BINDING / PROTEIN SERINE/THREONINE KINASE/ TRANSMEMBRANE RECEPTOR PROTEIN SERINE/THREONINE KINASE |
AT1G11890 | PredictedAffinity Capture-Western | FSW = 0.0845
| Unknown | SEC22 TRANSPORTER |
AT1G62020 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3692
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT ALPHA PUTATIVE |
AT4G20440 | Predictedtwo hybridtwo hybrid | FSW = 0.0205
| Unknown | SMB (SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B) |
AT5G27720 | PredictedAffinity Capture-MS | FSW = 0.0229
| Unknown | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT1G60970 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3176
| Unknown | CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN |
AT1G79990 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mapping | FSW = 0.1520
| Unknown | LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK) |
AT4G10320 | PredictedAffinity Capture-MS | FSW = 0.0779
| Unknown | ISOLEUCYL-TRNA SYNTHETASE PUTATIVE / ISOLEUCINE--TRNA LIGASE PUTATIVE |
AT4G17890 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1500
| Unknown | AGD8 (ARF-GAP DOMAIN 8) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT1G16280 | PredictedAffinity Capture-MS | FSW = 0.0264
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT3G60860 | PredictedCo-purification | FSW = 0.0220
| Unknown | GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN |
AT4G34450 | PredictedAffinity Capture-MSAffinity Capture-MSinterologs mappingAffinity Capture-MS | FSW = 0.2980
| Unknown | COATOMER GAMMA-2 SUBUNIT PUTATIVE / GAMMA-2 COAT PROTEIN PUTATIVE / GAMMA-2 COP PUTATIVE |
AT5G05010 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridsynthetic growth defect | FSW = 0.3750
| Unknown | CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT-RELATED |
AT5G64670 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0984
| Unknown | RIBOSOMAL PROTEIN L15 FAMILY PROTEIN |
AT5G30495 | PredictedAffinity Capture-MS | FSW = 0.0482
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S FCF2 PRE-RRNA PROCESSING (INTERPROIPR014810) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G547701) HAS 218 BLAST HITS TO 218 PROTEINS IN 114 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 88 FUNGI - 76 PLANTS - 26 VIRUSES - 0 OTHER EUKARYOTES - 28 (SOURCE NCBI BLINK) |
AT4G31480 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.5452
| Unknown | COATOMER BETA SUBUNIT PUTATIVE / BETA-COAT PROTEIN PUTATIVE / BETA-COP PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454