Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G31770 - ( calcineurin-like phosphoesterase family protein )
46 Proteins interacs with AT4G31770Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G01280 | PredictedAffinity Capture-MS | FSW = 0.2950
| Unknown | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
AT1G14010 | PredictedAffinity Capture-MS | FSW = 0.4006
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT3G59280 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0864
| Unknown | TXR1 (THAXTOMIN A RESISTANT 1) |
AT3G09820 | PredictedAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.5134
| Unknown | ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING |
AT5G15450 | PredictedAffinity Capture-MS | FSW = 0.1310
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G23740 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0448
| Unknown | OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN |
AT4G30950 | PredictedAffinity Capture-MS | FSW = 0.0121
| Unknown | FAD6 (FATTY ACID DESATURASE 6) OMEGA-6 FATTY ACID DESATURASE |
AT2G42590 | Predictedsynthetic growth defect | FSW = 0.0090
| Unknown | GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT4G08690 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4676
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT5G12480 | Predictedbiochemical | FSW = 0.0124
| Unknown | CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT1G63110 | PredictedAffinity Capture-MS | FSW = 0.3010
| Unknown | CELL DIVISION CYCLE PROTEIN-RELATED |
AT5G45380 | PredictedAffinity Capture-MS | FSW = 0.4066
| Unknown | SODIUMSOLUTE SYMPORTER FAMILY PROTEIN |
AT2G29140 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0598
| Unknown | APUM3 (ARABIDOPSIS PUMILIO 3) RNA BINDING / BINDING |
AT3G46900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4938
| Unknown | COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
AT5G59960 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5502
| Unknown | UNKNOWN PROTEIN |
AT1G06960 | PredictedAffinity Capture-MS | FSW = 0.0980
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE |
AT1G30810 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4804
| Unknown | TRANSCRIPTION FACTOR |
AT3G08980 | PredictedAffinity Capture-MS | FSW = 0.4651
| Unknown | SIGNAL PEPTIDASE I FAMILY PROTEIN |
AT4G21160 | PredictedAffinity Capture-MS | FSW = 0.0218
| Unknown | ZAC ARF GTPASE ACTIVATOR/ PHOSPHOLIPID BINDING |
AT4G17190 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1398
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT3G27530 | Predictedtwo hybridtwo hybrid | FSW = 0.0044
| Unknown | GC6 (GOLGIN CANDIDATE 6) BINDING / PROTEIN TRANSPORTER |
AT1G05830 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3844
| Unknown | ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2) DNA BINDING / HISTONE METHYLTRANSFERASE(H3-K4 SPECIFIC) |
AT1G10350 | PredictedAffinity Capture-MS | FSW = 0.3706
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT1G21370 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2211
| Unknown | UNKNOWN PROTEIN |
AT1G74250 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5902
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT2G20410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5081
| Unknown | ACTIVATING SIGNAL COINTEGRATOR-RELATED |
AT2G29680 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5918
| Unknown | CDC6 (CELL DIVISION CONTROL 6) |
AT2G29940 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5550
| Unknown | PDR3 (PLEIOTROPIC DRUG RESISTANCE 3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT3G05760 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3649
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
AT4G29910 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5401
| Unknown | ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING |
AT1G06790 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3322
| Unknown | RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT1G09270 | Predictedtwo hybrid | FSW = 0.0211
| Unknown | IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER |
AT1G18550 | PredictedAffinity Capture-MS | FSW = 0.2506
| Unknown | ATP BINDING / MICROTUBULE MOTOR |
AT3G52590 | PredictedAffinity Capture-MS | FSW = 0.4571
| Unknown | UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G53880 | PredictedCo-purification | FSW = 0.3653
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT4G00810 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4358
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1B) |
AT5G10260 | PredictedPhenotypic Enhancement | FSW = 0.0034
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G49970 | PredictedAffinity Capture-MS | FSW = 0.1851
| Unknown | ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE |
AT5G61010 | Predictedtwo hybrid | FSW = 0.0147
| Unknown | ATEXO70E2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN E2) PROTEIN BINDING |
AT5G13780 | PredictedPhenotypic Suppression | FSW = 0.0149
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT5G16960 | PredictedAffinity Capture-MS | FSW = 0.4251
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G26680 | PredictedPhenotypic Enhancement | FSW = 0.0043
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G55090 | PredictedPhenotypic Suppression | FSW = 0.0121
| Unknown | MAPKKK15 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G56510 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0546
| Unknown | APUM12 (ARABIDOPSIS PUMILIO 12) RNA BINDING / BINDING |
AT5G59890 | PredictedAffinity Capture-MS | FSW = 0.3062
| Unknown | ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) ACTIN BINDING |
AT2G23070 | Predictedsynthetic growth defect | FSW = 0.0238
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454