Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G31920 - ( ARR10 (ARABIDOPSIS RESPONSE REGULATOR 10) transcription factor/ two-component response regulator )
13 Proteins interacs with AT4G31920Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G39340 | Experimental | FSW = 0.1317
| Class A:nucleusClass B:cytosol | AHP3 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3) HISTIDINE PHOSPHOTRANSFER KINASE |
AT1G01300 | Experimentaltwo hybrid | FSW = 0.1000
| Class B:plastidnucleusextracellularClass D:nucleus (p = 0.78) | ASPARTYL PROTEASE FAMILY PROTEIN |
AT3G29350 | Experimentaltwo hybrid | FSW = 0.1595
| Class B:nucleuscytosolClass D:nucleus (p = 0.78) | AHP2 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2) HISTIDINE PHOSPHOTRANSFER KINASE/ PROTEIN BINDING / SIGNAL TRANSDUCER |
AT2G01760 | Experimental | FSW = 0.1754
| Class D:nucleus (p = 0.78) | ARR14 (ARABIDOPSIS RESPONSE REGULATOR 14) TRANSCRIPTION FACTOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT5G11090 | Experimentaltwo hybrid | FSW = 0.2000
| Unknown | SERINE-RICH PROTEIN-RELATED |
AT5G03230 | Experimentaltwo hybrid | FSW = 0.1429
| Unknown | UNKNOWN PROTEIN |
AT3G42433 | Experimentaltwo hybrid | FSW = 0.2500
| Unknown | UNKNOWN PROTEIN |
AT3G21510 | Experimentaltwo hybrid | FSW = 0.1368
| Unknown | AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1) HISTIDINE PHOSPHOTRANSFER KINASE |
AT5G11880 | Predictedpull down | FSW = 0.0504
| Unknown | DIAMINOPIMELATE DECARBOXYLASE PUTATIVE / DAP CARBOXYLASE PUTATIVE |
AT5G04590 | Predictedpull down | FSW = 0.0482
| Unknown | SIR SULFITE REDUCTASE (FERREDOXIN)/ SULFITE REDUCTASE |
AT1G79530 | Predictedpull down | FSW = 0.0313
| Unknown | GAPCP-1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT4G38680 | Predictedpull down | FSW = 0.0192
| Unknown | GRP2 (GLYCINE RICH PROTEIN 2) DOUBLE-STRANDED DNA BINDING / MRNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING |
AT1G63680 | Predictedpull down | FSW = 0.0833
| Unknown | MURE ATP BINDING / ACID-AMINO ACID LIGASE/ LIGASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454