Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G31985 - ( 60S ribosomal protein L39 (RPL39C) )
31 Proteins interacs with AT4G31985Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G01280 | PredictedAffinity Capture-MS | FSW = 0.1704
| Unknown | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
AT1G72730 | PredictedSynthetic LethalitySynthetic LethalityAffinity Capture-MS | FSW = 0.1951
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE |
AT1G14010 | PredictedAffinity Capture-MS | FSW = 0.2922
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT3G09820 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3123
| Unknown | ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING |
AT1G07790 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2116
| Unknown | HTB1 DNA BINDING |
AT4G04720 | PredictedAffinity Capture-MS | FSW = 0.2092
| Unknown | CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G25800 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.3232
| Unknown | PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT5G12480 | Predictedbiochemical | FSW = 0.0176
| Unknown | CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT5G45380 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3686
| Unknown | SODIUMSOLUTE SYMPORTER FAMILY PROTEIN |
AT5G22770 | PredictedAffinity Capture-MS | FSW = 0.0286
| Unknown | ALPHA-ADR (ALPHA-ADAPTIN) BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
AT4G14340 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4045
| Unknown | CKI1 (CASEIN KINASE I) KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G59960 | PredictedAffinity Capture-MS | FSW = 0.3333
| Unknown | UNKNOWN PROTEIN |
AT3G58660 | PredictedAffinity Capture-MS | FSW = 0.0050
| Unknown | 60S RIBOSOMAL PROTEIN-RELATED |
AT5G18620 | PredictedAffinity Capture-MS | FSW = 0.0187
| Unknown | CHR17 (CHROMATIN REMODELING FACTOR17) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / NUCLEOSOME BINDING |
AT3G08980 | PredictedAffinity Capture-MS | FSW = 0.3359
| Unknown | SIGNAL PEPTIDASE I FAMILY PROTEIN |
AT3G54300 | Predictedtwo hybridAffinity Capture-MStwo hybridAffinity Capture-Western | FSW = 0.3266
| Unknown | ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727) |
AT2G38960 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.2776
| Unknown | AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0061
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT1G15440 | PredictedAffinity Capture-MS | FSW = 0.0082
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G64550 | Predictedco-fractionationCo-fractionation | FSW = 0.0210
| Unknown | ATGCN3 TRANSPORTER |
AT2G20410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2842
| Unknown | ACTIVATING SIGNAL COINTEGRATOR-RELATED |
AT2G31060 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.4424
| Unknown | ELONGATION FACTOR FAMILY PROTEIN |
AT3G53880 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridCo-purification | FSW = 0.2420
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT4G19880 | PredictedAffinity Capture-MS | FSW = 0.0141
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RESPONSE TO CADMIUM ION LOCATED IN CHLOROPLAST EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G450201) HAS 1635 BLAST HITS TO 1635 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 905 METAZOA - 23 FUNGI - 158 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 480 (SOURCE NCBI BLINK) |
AT1G49760 | PredictedSynthetic Rescueinteraction prediction | FSW = 0.0112
| Unknown | PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT3G05760 | PredictedAffinity Capture-MS | FSW = 0.1794
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
AT3G56150 | PredictedSynthetic Rescue | FSW = 0.0098
| Unknown | EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C) TRANSLATION INITIATION FACTOR |
AT5G03030 | PredictedReconstituted ComplexAffinity Capture-MStwo hybridtwo hybridtwo hybridtwo hybridReconstituted Complexinterologs mappingAffinity Capture-WesternAffinity Capture-MS | FSW = 0.4690
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT1G54390 | Predictedtwo hybrid | FSW = 0.0265
| Unknown | PHD FINGER PROTEIN-RELATED |
AT2G25210 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0945
| Unknown | 60S RIBOSOMAL PROTEIN L39 (RPL39A) |
AT3G02190 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.0515
| Unknown | 60S RIBOSOMAL PROTEIN L39 (RPL39B) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454