Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G32530 - ( vacuolar ATP synthase putative / V-ATPase putative )
28 Proteins interacs with AT4G32530Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G09570 | Experimental | FSW = 0.0158
| Unknown | CPK4 CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE |
AT5G63400 | Predictedbiochemical | FSW = 0.0158
| Unknown | ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR |
AT1G19910 | Predictedco-fractionationCo-fractionation | FSW = 0.0626
| Unknown | AVA-P2 ATPASE/ PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT3G26590 | Predictedbiochemical | FSW = 0.0120
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT3G22845 | Predictedtwo hybridinteraction prediction | FSW = 0.0313
| Unknown | EMP24/GP25L/P24 PROTEIN-RELATED |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0114
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT4G14800 | Predictedinterologs mapping | FSW = 0.0173
| Unknown | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G55360 | Predictedtwo hybridinteraction prediction | FSW = 0.0748
| Unknown | CER10 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE/ FATTY ACID ELONGASE/ TRANS-2-ENOYL-COA REDUCTASE (NADPH) |
AT5G52640 | PredictedSynthetic Lethality | FSW = 0.0057
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT4G13980 | Predictedbiochemical | FSW = 0.0164
| Unknown | AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR |
AT1G76300 | PredictedPhenotypic Enhancement | FSW = 0.0124
| Unknown | SMD3 (SNRNP CORE PROTEIN SMD3) |
AT4G33730 | Predictedbiochemical | FSW = 0.0125
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT1G67730 | Predictedtwo hybrid | FSW = 0.0697
| Unknown | YBR159 KETOREDUCTASE/ OXIDOREDUCTASE |
AT1G15960 | Predictedtwo hybrid | FSW = 0.0606
| Unknown | NRAMP6 INORGANIC ANION TRANSMEMBRANE TRANSPORTER/ METAL ION TRANSMEMBRANE TRANSPORTER |
AT1G80830 | Predictedinteraction prediction | FSW = 0.0592
| Unknown | NRAMP1 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 1) INORGANIC ANION TRANSMEMBRANE TRANSPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ METAL ION TRANSMEMBRANE TRANSPORTER |
AT1G16570 | Predictedtwo hybridinteraction prediction | FSW = 0.1210
| Unknown | GLYCOSYL TRANSFERASE FAMILY 1 PROTEIN |
AT1G08750 | Predictedtwo hybridinteraction prediction | FSW = 0.0643
| Unknown | GPI-ANCHOR TRANSAMIDASE PUTATIVE |
AT1G26450 | Predictedinterologs mapping | FSW = 0.0269
| Unknown | BETA-13-GLUCANASE-RELATED |
AT1G31470 | Predictedtwo hybridinteraction prediction | FSW = 0.1634
| Unknown | NFD4 (NUCLEAR FUSION DEFECTIVE 4) |
AT1G56450 | Predictedinterologs mapping | FSW = 0.0441
| Unknown | PBG1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G70290 | Predictedbiochemical | FSW = 0.0165
| Unknown | ATTPS8 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.0118
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT2G02760 | PredictedSynthetic Lethality | FSW = 0.0125
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT3G18430 | PredictedSynthetic Lethality | FSW = 0.0566
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT4G14240 | Predictedbiochemical | FSW = 0.0063
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK) |
AT5G13780 | Predictedsynthetic growth defect | FSW = 0.0162
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT5G01230 | Predictedinteraction prediction | FSW = 0.1141
| Unknown | FTSJ-LIKE METHYLTRANSFERASE FAMILY PROTEIN |
AT2G25610 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4532
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE C SUBUNIT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454