Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G32660 - ( AME3 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase )
29 Proteins interacs with AT4G32660Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G17750 | Predictedtwo hybrid | FSW = 0.1605
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G64200 | Predictedtwo hybrid | FSW = 0.0217
| Unknown | ATSC35 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G52250 | Predictedtwo hybrid | FSW = 0.0044
| Unknown | DNA BINDING / TRANSCRIPTION FACTOR |
AT2G05720 | PredictedAffinity Capture-MSin vitro | FSW = 0.0909
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G25980 | Predictedtwo hybrid | FSW = 0.0192
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT4G02570 | Predictedtwo hybrid | FSW = 0.0535
| Unknown | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) PROTEIN BINDING |
AT3G53640 | Predictedtwo hybrid | FSW = 0.1558
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G20850 | Predictedtwo hybrid | FSW = 0.0329
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT1G31870 | Predictedtwo hybrid | FSW = 0.1429
| Unknown | UNKNOWN PROTEIN |
AT2G44200 | Predictedtwo hybrid | FSW = 0.0672
| Unknown | UNKNOWN PROTEIN |
AT3G05040 | Predictedtwo hybrid | FSW = 0.0263
| Unknown | HST (HASTY) NUCLEOCYTOPLASMIC TRANSPORTER |
AT3G54230 | Predictedtwo hybrid | FSW = 0.0312
| Unknown | NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
AT3G57870 | Predictedtwo hybrid | FSW = 0.0671
| Unknown | SCE1 (SUMO CONJUGATION ENZYME 1) SUMO LIGASE |
AT4G02430 | Predictedtwo hybridtwo hybridAffinity Capture-MSin vitro | FSW = 0.1242
| Unknown | PRE-MRNA SPLICING FACTOR PUTATIVE / SR1 PROTEIN PUTATIVE |
AT4G19000 | Predictedtwo hybrid | FSW = 0.1250
| Unknown | IWS1 C-TERMINUS FAMILY PROTEIN |
AT1G26830 | Predictedtwo hybrid | FSW = 0.0615
| Unknown | ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G42190 | Predictedtwo hybrid | FSW = 0.0214
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G47650 | Predictedtwo hybrid | FSW = 0.1053
| Unknown | ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2) ADP-RIBOSE DIPHOSPHATASE/ NAD OR NADH BINDING / HYDROLASE |
AT5G09880 | Predictedtwo hybrid | FSW = 0.1058
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G19400 | Predictedtwo hybrid | FSW = 0.1428
| Unknown | SMG7 |
AT5G50960 | Predictedtwo hybrid | FSW = 0.0275
| Unknown | NBP35 (NUCLEOTIDE BINDING PROTEIN 35) IRON-SULFUR CLUSTER BINDING / NUCLEOTIDE BINDING / PROTEIN HOMODIMERIZATION |
AT5G55260 | Predictedtwo hybrid | FSW = 0.1111
| Unknown | PPX2 (PROTEIN PHOSPHATASE X 2) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G59160 | Predictedtwo hybrid | FSW = 0.0362
| Unknown | TOPP2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G15790 | PredictedAffinity Capture-MS | FSW = 0.0098
| Unknown | SQN (SQUINT) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT3G45180 | Predictedtwo hybridAffinity Capture-MStwo hybridReconstituted Complex | FSW = 0.0833
| Unknown | UBIQUITIN FAMILY PROTEIN |
AT5G51410 | Predictedin vitro | FSW = 0.0275
| Unknown | LUC7 N_TERMINUS DOMAIN-CONTAINING PROTEIN |
AT4G36980 | Predictedin vitrotwo hybrid | FSW = 0.0580
| Unknown | UNKNOWN PROTEIN |
AT5G22840 | Predictedinterologs mappingSynthetic Lethality | FSW = 0.0168
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G24740 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3743
| Unknown | AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2) KINASE/ PROTEIN KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454