Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G32660 - ( AME3 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase )

29 Proteins interacs with AT4G32660
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G17750

Predicted

two hybrid

FSW = 0.1605

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT5G64200

Predicted

two hybrid

FSW = 0.0217

Unknown

ATSC35 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G52250

Predicted

two hybrid

FSW = 0.0044

Unknown

DNA BINDING / TRANSCRIPTION FACTOR
AT2G05720

Predicted

Affinity Capture-MS

in vitro

FSW = 0.0909

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G25980

Predicted

two hybrid

FSW = 0.0192

Unknown

MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2)
AT4G02570

Predicted

two hybrid

FSW = 0.0535

Unknown

ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) PROTEIN BINDING
AT3G53640

Predicted

two hybrid

FSW = 0.1558

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT5G20850

Predicted

two hybrid

FSW = 0.0329

Unknown

ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT1G31870

Predicted

two hybrid

FSW = 0.1429

Unknown

UNKNOWN PROTEIN
AT2G44200

Predicted

two hybrid

FSW = 0.0672

Unknown

UNKNOWN PROTEIN
AT3G05040

Predicted

two hybrid

FSW = 0.0263

Unknown

HST (HASTY) NUCLEOCYTOPLASMIC TRANSPORTER
AT3G54230

Predicted

two hybrid

FSW = 0.0312

Unknown

NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING
AT3G57870

Predicted

two hybrid

FSW = 0.0671

Unknown

SCE1 (SUMO CONJUGATION ENZYME 1) SUMO LIGASE
AT4G02430

Predicted

two hybrid

two hybrid

Affinity Capture-MS

in vitro

FSW = 0.1242

Unknown

PRE-MRNA SPLICING FACTOR PUTATIVE / SR1 PROTEIN PUTATIVE
AT4G19000

Predicted

two hybrid

FSW = 0.1250

Unknown

IWS1 C-TERMINUS FAMILY PROTEIN
AT1G26830

Predicted

two hybrid

FSW = 0.0615

Unknown

ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G42190

Predicted

two hybrid

FSW = 0.0214

Unknown

ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G47650

Predicted

two hybrid

FSW = 0.1053

Unknown

ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2) ADP-RIBOSE DIPHOSPHATASE/ NAD OR NADH BINDING / HYDROLASE
AT5G09880

Predicted

two hybrid

FSW = 0.1058

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT5G19400

Predicted

two hybrid

FSW = 0.1428

Unknown

SMG7
AT5G50960

Predicted

two hybrid

FSW = 0.0275

Unknown

NBP35 (NUCLEOTIDE BINDING PROTEIN 35) IRON-SULFUR CLUSTER BINDING / NUCLEOTIDE BINDING / PROTEIN HOMODIMERIZATION
AT5G55260

Predicted

two hybrid

FSW = 0.1111

Unknown

PPX2 (PROTEIN PHOSPHATASE X 2) PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G59160

Predicted

two hybrid

FSW = 0.0362

Unknown

TOPP2 PROTEIN SERINE/THREONINE PHOSPHATASE
AT2G15790

Predicted

Affinity Capture-MS

FSW = 0.0098

Unknown

SQN (SQUINT) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT3G45180

Predicted

two hybrid

Affinity Capture-MS

two hybrid

Reconstituted Complex

FSW = 0.0833

Unknown

UBIQUITIN FAMILY PROTEIN
AT5G51410

Predicted

in vitro

FSW = 0.0275

Unknown

LUC7 N_TERMINUS DOMAIN-CONTAINING PROTEIN
AT4G36980

Predicted

in vitro

two hybrid

FSW = 0.0580

Unknown

UNKNOWN PROTEIN
AT5G22840

Predicted

interologs mapping

Synthetic Lethality

FSW = 0.0168

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT4G24740

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.3743

Unknown

AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2) KINASE/ PROTEIN KINASE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454