Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G32760 - ( protein transporter )
17 Proteins interacs with AT4G32760Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G62290 | Predictedtwo hybridtwo hybridAffinity Capture-Western | FSW = 0.0390
| Class C:plasma membrane | ATARFA1E (ADP-RIBOSYLATION FACTOR A1E) GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT3G08530 | PredictedAffinity Capture-MSAffinity Capture-WesternReconstituted Complex | FSW = 0.1605
| Class C:plasma membrane | CLATHRIN HEAVY CHAIN PUTATIVE |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0264
| Class C:plasma membrane | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT4G23460 | PredictedAffinity Capture-Westernsynthetic growth defect | FSW = 0.2450
| Class C:plasma membrane | BETA-ADAPTIN PUTATIVE |
AT5G11710 | PredictedAffinity Capture-WesternAffinity Capture-MStwo hybridReconstituted Complex | FSW = 0.2609
| Unknown | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN / CLATHRIN ASSEMBLY PROTEIN-RELATED |
AT5G46860 | Predictedtwo hybrid | FSW = 0.0966
| Unknown | VAM3 SNAP RECEPTOR |
AT1G64790 | PredictedAffinity Capture-MS | FSW = 0.0186
| Unknown | BINDING |
AT5G63840 | PredictedSynthetic Lethality | FSW = 0.0381
| Unknown | RSW3 (RADIAL SWELLING 3) GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT3G12480 | Predictedtwo hybrid | FSW = 0.0429
| Unknown | NF-YC11 (NUCLEAR FACTOR Y SUBUNIT C11) DNA BINDING / TRANSCRIPTION FACTOR |
AT2G38560 | PredictedSynthetic Lethality | FSW = 0.0157
| Unknown | TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR |
AT2G47110 | Predictedtwo hybrid | FSW = 0.0536
| Unknown | UBQ6 PROTEIN BINDING |
AT3G52590 | Predictedtwo hybrid | FSW = 0.0343
| Unknown | UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G17380 | PredictedAffinity Capture-Western | FSW = 0.1672
| Unknown | AP19 PROTEIN BINDING / PROTEIN TRANSPORTER |
AT3G03110 | Predictedtwo hybrid | FSW = 0.0368
| Unknown | XPO1B BINDING / PROTEIN TRANSPORTER |
AT3G12740 | PredictedSynthetic Lethality | FSW = 0.1455
| Unknown | ALIS1 (ALA-INTERACTING SUBUNIT 1) PHOSPHOLIPID TRANSPORTER |
AT3G23270 | Predictedsynthetic growth defect | FSW = 0.2904
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT4G05320 | PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.0494
| Unknown | UBQ10 (POLYUBIQUITIN 10) PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454