Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G32850 - ( nPAP (NUCLEAR POLY(A) POLYMERASE) nucleotidyltransferase/ protein binding )
41 Proteins interacs with AT4G32850Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G10350 | Experimental | FSW = 0.0252
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT1G17980 | Experimental | FSW = 0.0331
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
AT5G23880 | Experimentaltwo hybridReconstituted Complex | FSW = 0.0222
| Unknown | CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) DNA BINDING / PROTEIN BINDING |
AT5G58040 | Experimentalpull down | FSW = 0.1579
| Unknown | ATFIP1[V] (ARABIDOPSIS HOMOLOG OF YEAST FIP1 [V]) RNA BINDING / PROTEIN BINDING |
AT3G06260 | Experimental | FSW = 0.0216
| Unknown | GATL4 (GALACTURONOSYLTRANSFERASE-LIKE 4) POLYGALACTURONATE 4-ALPHA-GALACTURONOSYLTRANSFERASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TRANSFERASE TRANSFERRING HEXOSYL GROUPS |
AT5G51120 | Experimental | FSW = 0.1000
| Unknown | PABN1 (POLYADENYLATE-BINDING PROTEIN 1) RNA BINDING / POLY(A) BINDING / PROTEIN BINDING |
AT5G65260 | Experimental | FSW = 0.1189
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT3G66652 | Experimental | FSW = 0.0454
| Unknown | FIP1 MOTIF-CONTAINING PROTEIN |
AT1G28200 | Experimentaltwo hybridReconstituted Complex | FSW = 0.0800
| Unknown | FIP1 (FH INTERACTING PROTEIN 1) |
AT4G38510 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2262
| Unknown | VACUOLAR ATP SYNTHASE SUBUNIT B PUTATIVE / V-ATPASE B SUBUNIT PUTATIVE / VACUOLAR PROTON PUMP B SUBUNIT PUTATIVE / V-ATPASE 57 KDA SUBUNIT PUTATIVE |
AT5G19320 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerntwo hybrid | FSW = 0.2561
| Unknown | RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2) RAN GTPASE ACTIVATOR |
AT3G49010 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0597
| Unknown | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G54270 | PredictedAffinity Capture-MS | FSW = 0.0085
| Unknown | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0142
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G22110 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-Western | FSW = 0.0621
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G29210 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0348
| Unknown | GGT4 (GAMMA-GLUTAMYL TRANSPEPTIDASE 4) GAMMA-GLUTAMYLTRANSFERASE/ GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE |
AT5G16150 | PredictedAffinity Capture-MStwo hybridAffinity Capture-MS | FSW = 0.0434
| Unknown | PGLCT (PLASTIDIC GLC TRANSLOCATOR) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G19160 | PredictedAffinity Capture-MS | FSW = 0.0324
| Unknown | ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES) ADENYLATE DIMETHYLALLYLTRANSFERASE |
AT1G19660 | PredictedSynthetic Lethality | FSW = 0.0599
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
AT1G61520 | PredictedAffinity Capture-MS | FSW = 0.0320
| Unknown | LHCA3 CHLOROPHYLL BINDING |
AT1G76850 | Predictedtwo hybrid | FSW = 0.0421
| Unknown | SEC5A (EXOCYST COMPLEX COMPONENT SEC5) |
AT5G59950 | PredictedPhenotypic Enhancement | FSW = 0.1059
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT2G30260 | PredictedAffinity Capture-MS | FSW = 0.0125
| Unknown | U2B (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT1G65440 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1399
| Unknown | GTB1 RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / TRANSCRIPTION ELONGATION REGULATOR |
AT1G73690 | PredictedAffinity Capture-Western | FSW = 0.0250
| Unknown | CDKD11 (CYCLIN-DEPENDENT KINASE D11) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G14580 | PredictedSynthetic Lethality | FSW = 0.0186
| Unknown | ATPRB1 |
AT3G16050 | PredictedAffinity Capture-MS | FSW = 0.0208
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT1G18100 | PredictedAffinity Capture-MS | FSW = 0.0302
| Unknown | E12A11 PHOSPHATIDYLETHANOLAMINE BINDING |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0028
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT1G66510 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MS | FSW = 0.0400
| Unknown | AAR2 PROTEIN FAMILY |
AT3G08650 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.2653
| Unknown | METAL TRANSPORTER FAMILY PROTEIN |
AT1G12130 | PredictedSynthetic Lethality | FSW = 0.0178
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT1G26320 | PredictedAffinity Capture-MS | FSW = 0.0479
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT1G68530 | PredictedAffinity Capture-MS | FSW = 0.0376
| Unknown | KCS6 (3-KETOACYL-COA SYNTHASE 6) CATALYTIC/ TRANSFERASE TRANSFERRING ACYL GROUPS OTHER THAN AMINO-ACYL GROUPS |
AT2G14880 | PredictedAffinity Capture-MS | FSW = 0.0296
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT2G29680 | PredictedAffinity Capture-MS | FSW = 0.0154
| Unknown | CDC6 (CELL DIVISION CONTROL 6) |
AT2G46710 | Predictedinterologs mapping | FSW = 0.0507
| Unknown | RAC GTPASE ACTIVATING PROTEIN PUTATIVE |
AT2G47090 | PredictedSynthetic Lethality | FSW = 0.0226
| Unknown | NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT5G16040 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1016
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT5G40530 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.2468
| Unknown | EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S METHYLTRANSFERASE-RELATED (INTERPROIPR007823) HAS 293 BLAST HITS TO 293 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 93 FUNGI - 88 PLANTS - 22 VIRUSES - 0 OTHER EUKARYOTES - 90 (SOURCE NCBI BLINK) |
AT5G60870 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1691
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454