Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G33100 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 23 plant structures EXPRESSED DURING 15 growth stages CONTAINS InterPro DOMAIN/s Mitochondrial distribution and morphology family 35/apoptosis (InterProIPR007918) Has 160 Blast hits to 160 proteins in 70 species Archae - 0 Bacteria - 0 Metazoa - 95 Fungi - 46 Plants - 13 Viruses - 0 Other Eukaryotes - 6 (source NCBI BLink) )

19 Proteins interacs with AT4G33100
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G63110

Predicted

Phenotypic Enhancement

FSW = 0.0795

Unknown

 HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE
AT4G35800

Predicted

Phenotypic Enhancement

FSW = 0.0478

Unknown

 NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT3G13940

Predicted

Phenotypic Suppression

FSW = 0.0224

Unknown

 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT2G35670

Predicted

Phenotypic Suppression

FSW = 0.0373

Unknown

 FIS2 (FERTILIZATION INDEPENDENT SEED 2) TRANSCRIPTION FACTOR
AT2G24500

Predicted

Phenotypic Suppression

FSW = 0.0364

Unknown

 FZF TRANSCRIPTION FACTOR
AT2G06210

Predicted

Phenotypic Suppression

FSW = 0.0968

Unknown

 ELF8 (EARLY FLOWERING 8) BINDING
AT2G38670

Predicted

interologs mapping

FSW = 0.0404

Unknown

 PECT1 (PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1) ETHANOLAMINE-PHOSPHATE CYTIDYLYLTRANSFERASE
AT2G42120

Predicted

Phenotypic Enhancement

FSW = 0.0104

Unknown

 POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT) DNA BINDING / DNA-DIRECTED DNA POLYMERASE
AT2G22690

Predicted

Phenotypic Enhancement

FSW = 0.0404

Unknown

 PROTEIN BINDING / ZINC ION BINDING
AT2G44150

Predicted

Phenotypic Enhancement

FSW = 0.0923

Unknown

 ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE
AT3G54380

Predicted

Phenotypic Suppression

FSW = 0.0719

Unknown

 SAC3/GANP FAMILY PROTEIN
AT1G32130

Predicted

Phenotypic Enhancement

FSW = 0.0741

Unknown

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK)
AT1G59890

Predicted

Phenotypic Enhancement

FSW = 0.1449

Unknown

 SNL5 (SIN3-LIKE 5)
AT3G18520

Predicted

Phenotypic Suppression

FSW = 0.1230

Unknown

 HDA15 HISTONE DEACETYLASE
AT3G22590

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0703

Unknown

 RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT3G56200

Predicted

Phenotypic Suppression

interologs mapping

FSW = 0.0909

Unknown

 AMINO ACID TRANSPORTER FAMILY PROTEIN
AT5G55310

Predicted

Phenotypic Suppression

FSW = 0.0981

Unknown

 TOP1BETA (DNA TOPOISOMERASE 1 BETA) DNA TOPOISOMERASE TYPE I
AT5G61150

Predicted

Phenotypic Enhancement

FSW = 0.1404

Unknown

 VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING
AT5G41880

Predicted

Phenotypic Suppression

FSW = 0.0494

Unknown

 POLA3 DNA PRIMASE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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