Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G33200 - ( XI-I motor/ protein binding )
28 Proteins interacs with AT4G33200Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G16480 | PredictedAffinity Capture-MS | FSW = 0.0087
| Unknown | MPPALPHA (MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ ZINC ION BINDING |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0161
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G16030 | PredictedPhenotypic Enhancement | FSW = 0.0602
| Unknown | HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING |
AT1G74710 | PredictedAffinity Capture-MS | FSW = 0.0209
| Unknown | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
AT3G62030 | Predictedinterologs mapping | FSW = 0.0919
| Unknown | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CHLOROPLAST / CYCLOPHILIN / ROTAMASE / CYCLOSPORIN A-BINDING PROTEIN (ROC4) |
AT5G17990 | PredictedPhenotypic Enhancement | FSW = 0.0882
| Unknown | TRP1 (TRYPTOPHAN BIOSYNTHESIS 1) ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE |
AT5G53480 | Predictedinterologs mapping | FSW = 0.0137
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT5G62880 | PredictedAffinity Capture-MS | FSW = 0.0316
| Unknown | ARAC10 GTP BINDING |
AT2G33370 | Predictedtwo hybrid | FSW = 0.0225
| Unknown | 60S RIBOSOMAL PROTEIN L23 (RPL23B) |
AT4G24400 | PredictedAffinity Capture-MS | FSW = 0.0309
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT2G39480 | PredictedPhenotypic Enhancement | FSW = 0.0176
| Unknown | PGP6 (P-GLYCOPROTEIN 6) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT1G64230 | PredictedPhenotypic EnhancementAffinity Capture-MS | FSW = 0.0878
| Unknown | UBIQUITIN-CONJUGATING ENZYME PUTATIVE |
AT5G22780 | PredictedAffinity Capture-MS | FSW = 0.1371
| Unknown | ADAPTIN FAMILY PROTEIN |
AT1G76300 | PredictedPhenotypic Enhancement | FSW = 0.0316
| Unknown | SMD3 (SNRNP CORE PROTEIN SMD3) |
AT5G60980 | PredictedAffinity Capture-MS | FSW = 0.0482
| Unknown | NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT4G02570 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0692
| Unknown | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) PROTEIN BINDING |
AT3G10610 | PredictedPhenotypic Enhancement | FSW = 0.0246
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17C) |
AT1G63370 | PredictedAffinity Capture-MS | FSW = 0.0955
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT1G74320 | PredictedAffinity Capture-MS | FSW = 0.0433
| Unknown | CHOLINE KINASE PUTATIVE |
AT3G19670 | PredictedPhenotypic Enhancement | FSW = 0.0639
| Unknown | PROTEIN BINDING |
AT4G37880 | PredictedPhenotypic Enhancement | FSW = 0.1141
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT5G14050 | PredictedPhenotypic Enhancement | FSW = 0.0188
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G39330 | PredictedAffinity Capture-MS | FSW = 0.0225
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT3G57350 | Predictedtwo hybrid | FSW = 0.0625
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT LOCATED IN NUCLEAR PORE CONTAINS INTERPRO DOMAIN/S NUCLEOPORIN INTERACTING COMPONENT NUP93/NIC96 (INTERPROIPR007231) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS NUCLEOPORIN INTERACTING COMPONENT FAMILY PROTEIN (TAIRAT2G416201) HAS 234 BLAST HITS TO 230 PROTEINS IN 99 SPECIES ARCHAE - 0 BACTERIA - 3 METAZOA - 124 FUNGI - 76 PLANTS - 29 VIRUSES - 0 OTHER EUKARYOTES - 2 (SOURCE NCBI BLINK) |
AT4G08320 | Predictedtwo hybrid | FSW = 0.0373
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT1G61150 | Predictedtwo hybrid | FSW = 0.0938
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S LISH DIMERISATION MOTIF SUBGROUP (INTERPROIPR013720) CTLH C-TERMINAL TO LISH MOTIF (INTERPROIPR006595) LISH DIMERISATION MOTIF (INTERPROIPR006594) CT11-RANBPM (INTERPROIPR013144) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G111101) HAS 740 BLAST HITS TO 708 PROTEINS IN 137 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 401 FUNGI - 144 PLANTS - 139 VIRUSES - 0 OTHER EUKARYOTES - 56 (SOURCE NCBI BLINK) |
AT1G54560 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0368
| Unknown | XIE MOTOR/ PROTEIN BINDING |
AT5G20490 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.1838
| Unknown | XIK MOTOR/ PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454