Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G33260 - ( CDC202 signal transducer )
23 Proteins interacs with AT4G33260Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G75780 | PredictedGene fusion method | FSW = 0.1270
| Unknown | TUB1 GTP BINDING / GTPASE/ STRUCTURAL MOLECULE |
AT4G39960 | PredictedGene fusion method | FSW = 0.1429
| Unknown | DNAJ HEAT SHOCK FAMILY PROTEIN |
AT1G42970 | PredictedGene fusion method | FSW = 0.1109
| Unknown | GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (NADP+)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT1G47210 | Predictedin vivotwo hybrid | FSW = 0.0362
| Unknown | CYCLIN FAMILY PROTEIN |
AT3G53170 | PredictedGene fusion method | FSW = 0.6525
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN GLUTAMINE BIOSYNTHETIC PROCESS LOCATED IN NUCLEOLUS EXPRESSED IN 9 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PENTATRICOPEPTIDE REPEAT (INTERPROIPR002885) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN (TAIRAT5G487301) HAS 17188 BLAST HITS TO 5538 PROTEINS IN 167 SPECIES ARCHAE - 1 BACTERIA - 16 METAZOA - 307 FUNGI - 211 PLANTS - 16025 VIRUSES - 0 OTHER EUKARYOTES - 628 (SOURCE NCBI BLINK) |
AT1G04980 | PredictedGene fusion method | FSW = 0.4685
| Unknown | ATPDIL2-2 (PDI-LIKE 2-2) PROTEIN DISULFIDE ISOMERASE |
AT3G25980 | Predictedin vivoin vivoin vivoin vivoin vitroin vitroin vitroin vitroAffinity Capture-MSin vitroin vivo | FSW = 0.0526
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT4G11920 | PredictedPhenotypic SuppressionPhenotypic SuppressionGene neighbors methodPhylogenetic profile method | FSW = 0.1510
| Unknown | CCS52A2 SIGNAL TRANSDUCER |
AT4G28820 | Predictedtwo hybridtwo hybrid | FSW = 0.0833
| Unknown | ZINC FINGER (HIT TYPE) FAMILY PROTEIN |
AT3G16320 | Predictedin vivoin vitroAffinity Capture-MSin vitroin vivo | FSW = 0.2180
| Unknown | CDC27A BINDING |
AT2G33560 | Predictedtwo hybridtwo hybridtwo hybridin vivoin vivoin vivoin vitroin vitroin vitroin vitroin vivotwo hybrid | FSW = 0.0462
| Unknown | SPINDLE CHECKPOINT PROTEIN-RELATED |
AT1G78770 | Predictedin vivoin vitroin vitroin vivo | FSW = 0.0525
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT4G33270 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.2727
| Unknown | CDC201 SIGNAL TRANSDUCER |
AT4G22910 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.1920
| Unknown | FZR2 (FIZZY-RELATED 2) SIGNAL TRANSDUCER |
AT5G27080 | PredictedPhylogenetic profile method | FSW = 0.3795
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT5G26900 | PredictedPhylogenetic profile method | FSW = 0.3200
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT4G28410 | PredictedGene fusion method | FSW = 0.1910
| Unknown | AMINOTRANSFERASE-RELATED |
AT1G78070 | PredictedGene fusion method | FSW = 0.1109
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CUL4 RING UBIQUITIN LIGASE COMPLEX EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S WD40 REPEAT-LIKE (INTERPROIPR011046) WD40 REPEAT REGION (INTERPROIPR017986) WD40/YVTN REPEAT-LIKE (INTERPROIPR015943) WD40 REPEAT (INTERPROIPR001680) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS WD-40 REPEAT FAMILY PROTEIN (TAIRAT1G360701) HAS 110 BLAST HITS TO 110 PROTEINS IN 30 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 0 FUNGI - 28 PLANTS - 80 VIRUSES - 0 OTHER EUKARYOTES - 2 (SOURCE NCBI BLINK) |
AT1G20490 | PredictedGene fusion method | FSW = 0.1048
| Unknown | AMP-DEPENDENT SYNTHETASE AND LIGASE FAMILY PROTEIN |
AT2G30940 | PredictedGene fusion method | FSW = 0.1109
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G01140 | PredictedGene fusion method | FSW = 0.1143
| Unknown | CIPK9 (CBL-INTERACTING PROTEIN KINASE 9) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G79820 | PredictedGene fusion method | FSW = 0.0802
| Unknown | SGB1 (SUPPRESSOR OF G PROTEIN BETA1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G26200 | PredictedGene fusion method | FSW = 0.1815
| Unknown | ACS7 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454