Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G33430 - ( BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE) kinase/ protein binding / protein heterodimerization/ protein serine/threonine kinase )
21 Proteins interacs with AT4G33430Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G78300 | Experimental | FSW = 0.0166
| Class A:plasma membraneClass B:vacuoleperoxisomenucleusextracellularcytosolcytoskeletonClass D:plasma membrane (p = 0.25)cytosol (p = 0.67) | GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT2G30870 | Experimentalinteraction detection methodinteraction detection method | FSW = 0.0381
| Class A:plasma membraneClass B:vacuoleperoxisomeextracellularcytosolClass D:extracellular (p = 0.86)cytosol (p = 0.67) | GSTF10 (HALIANA GLUTATHIONE S-TRANSFERASE PHI 10) COPPER ION BINDING / GLUTATHIONE BINDING / GLUTATHIONE TRANSFERASE |
AT4G39400 | Experimentaltwo hybridin vitroAffinity Capture-WesternAffinity Capture-Westernbiochemicalinteraction detection methodSynthetic RescuebiochemicalReconstituted ComplexAffinity Capture-Westernfluorescence acceptor donor pairfluorescence acceptor donor pairin vitroin vitroaffinity technology | FSW = 0.2707
| Class A:plasma membraneClass B:vacuoleextracellularClass D:extracellular (p = 0.86)endoplasmic reticulum (p = 0.46)cytosol (p = 0.67) | BRI1 (BRASSINOSTEROID INSENSITIVE 1) KINASE/ PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G71830 | ExperimentalAffinity Capture-MSfluorescence acceptor donor pair | FSW = 0.1172
| Class A:plasma membraneClass B:unclearextracellularendoplasmic reticulumClass D:plasma membrane (p = 0.25)extracellular (p = 0.86)endoplasmic reticulum (p = 0.46)cytosol (p = 0.67) | SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1) KINASE/ TRANSMEMBRANE RECEPTOR PROTEIN SERINE/THREONINE KINASE |
AT1G55610 | Experimentalpull downpull downconfocal microscopy | FSW = 0.0750
| Class A:plasma membraneClass B:extracellularClass D:plasma membrane (p = 0.25)extracellular (p = 0.86)endoplasmic reticulum (p = 0.46)cytosol (p = 0.67) | BRL1 (BRI 1 LIKE) KINASE |
AT5G46330 | Experimentalconfocal microscopyAffinity Capture-Westernaffinity technology | FSW = 0.1800
| Class A:plasma membraneClass B:extracellularClass D:plasma membrane (p = 0.25)extracellular (p = 0.86)endoplasmic reticulum (p = 0.46)cytosol (p = 0.67) | FLS2 (FLAGELLIN-SENSITIVE 2) ATP BINDING / KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ TRANSMEMBRANE RECEPTOR PROTEIN SERINE/THREONINE KINASE |
AT1G73080 | Experimentaltwo hybrid | FSW = 0.1333
| Class A:plasma membraneClass B:extracellularClass D:plasma membrane (p = 0.25)extracellular (p = 0.86)endoplasmic reticulum (p = 0.46)cytosol (p = 0.67) | PEPR1 (PEP1 RECEPTOR 1) ATP BINDING / KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE |
AT5G19280 | ExperimentalCo-crystal Structurefar western blottingCo-crystallization | FSW = 0.2338
| Class A:plasma membraneClass B:extracellularClass D:extracellular (p = 0.86)endoplasmic reticulum (p = 0.46)cytosol (p = 0.67) | KAPP (KINASE ASSOCIATED PROTEIN PHOSPHATASE) PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN KINASE BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G17750 | Experimentaltwo hybrid | FSW = 0.1333
| Class A:plasma membraneClass B:extracellularClass D:extracellular (p = 0.86)endoplasmic reticulum (p = 0.46)cytosol (p = 0.67) | LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE PUTATIVE |
AT5G57360 | Experimental | FSW = 0.1558
| Class B:plasma membranenucleusextracellularcytosolClass D:cytosol (p = 0.67) | ZTL (ZEITLUPE) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G02840 | Experimentalpull down | FSW = 0.0175
| Class B:plasma membranenucleusextracellular | SR1 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G21850 | Experimental | FSW = 0.2825
| Unknown | ASK9 (ARABIDOPSIS SKP1-LIKE 9) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G60010 | Experimental | FSW = 0.2090
| Unknown | ASK13 (ARABIDOPSIS SKP1-LIKE 13) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G10230 | Experimental | FSW = 0.2438
| Unknown | ASK18 (ARABIDOPSIS SKP1-LIKE 18) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G03160 | Experimental | FSW = 0.2010
| Unknown | ASK19 (ARABIDOPSIS SKP1-LIKE 19) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G25650 | Experimental | FSW = 0.2844
| Unknown | ASK15 (ARABIDOPSIS SKP1-LIKE 15) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G20160 | Experimental | FSW = 0.3048
| Unknown | MEO (MEIDOS) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G03170 | Experimental | FSW = 0.2778
| Unknown | ASK14 (ARABIDOPSIS SKP1-LIKE 14) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G01620 | Experimental | FSW = 0.2179
| Unknown | MEE11 (MATERNAL EFFECT EMBRYO ARREST 11) |
AT3G05270 | PredictedGene fusion method | FSW = 0.0345
| Unknown | EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF869 PLANT (INTERPROIPR008587) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS MYOSIN HEAVY CHAIN-RELATED (TAIRAT1G775802) HAS 97002 BLAST HITS TO 49715 PROTEINS IN 2003 SPECIES ARCHAE - 1158 BACTERIA - 12418 METAZOA - 49297 FUNGI - 7501 PLANTS - 3801 VIRUSES - 453 OTHER EUKARYOTES - 22374 (SOURCE NCBI BLINK) |
AT2G13800 | PredictedPhylogenetic profile method | FSW = 0.0356
| Unknown | SERK5 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 5) ATP BINDING / PROTEIN KINASE/ TRANSMEMBRANE RECEPTOR PROTEIN SERINE/THREONINE KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454