Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT4G33430 - ( BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE) kinase/ protein binding / protein heterodimerization/ protein serine/threonine kinase )

21 Proteins interacs with AT4G33430
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G78300

Experimental

FSW = 0.0166

Class A:

plasma membrane

Class B:

vacuole

peroxisome

nucleus

extracellular

cytosol

cytoskeleton

Class D:

plasma membrane (p = 0.25)

cytosol (p = 0.67)

GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT2G30870

Experimental

interaction detection method

interaction detection method

FSW = 0.0381

Class A:

plasma membrane

Class B:

vacuole

peroxisome

extracellular

cytosol

Class D:

extracellular (p = 0.86)

cytosol (p = 0.67)

GSTF10 (HALIANA GLUTATHIONE S-TRANSFERASE PHI 10) COPPER ION BINDING / GLUTATHIONE BINDING / GLUTATHIONE TRANSFERASE
AT4G39400

Experimental

two hybrid

in vitro

Affinity Capture-Western

Affinity Capture-Western

biochemical

interaction detection method

Synthetic Rescue

biochemical

Reconstituted Complex

Affinity Capture-Western

fluorescence acceptor donor pair

fluorescence acceptor donor pair

in vitro

in vitro

affinity technology

FSW = 0.2707

Class A:

plasma membrane

Class B:

vacuole

extracellular

Class D:

extracellular (p = 0.86)

endoplasmic reticulum (p = 0.46)

cytosol (p = 0.67)

BRI1 (BRASSINOSTEROID INSENSITIVE 1) KINASE/ PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G71830

Experimental

Affinity Capture-MS

fluorescence acceptor donor pair

FSW = 0.1172

Class A:

plasma membrane

Class B:

unclear

extracellular

endoplasmic reticulum

Class D:

plasma membrane (p = 0.25)

extracellular (p = 0.86)

endoplasmic reticulum (p = 0.46)

cytosol (p = 0.67)

SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1) KINASE/ TRANSMEMBRANE RECEPTOR PROTEIN SERINE/THREONINE KINASE
AT1G55610

Experimental

pull down

pull down

confocal microscopy

FSW = 0.0750

Class A:

plasma membrane

Class B:

extracellular

Class D:

plasma membrane (p = 0.25)

extracellular (p = 0.86)

endoplasmic reticulum (p = 0.46)

cytosol (p = 0.67)

BRL1 (BRI 1 LIKE) KINASE
AT5G46330

Experimental

confocal microscopy

Affinity Capture-Western

affinity technology

FSW = 0.1800

Class A:

plasma membrane

Class B:

extracellular

Class D:

plasma membrane (p = 0.25)

extracellular (p = 0.86)

endoplasmic reticulum (p = 0.46)

cytosol (p = 0.67)

FLS2 (FLAGELLIN-SENSITIVE 2) ATP BINDING / KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ TRANSMEMBRANE RECEPTOR PROTEIN SERINE/THREONINE KINASE
AT1G73080

Experimental

two hybrid

FSW = 0.1333

Class A:

plasma membrane

Class B:

extracellular

Class D:

plasma membrane (p = 0.25)

extracellular (p = 0.86)

endoplasmic reticulum (p = 0.46)

cytosol (p = 0.67)

PEPR1 (PEP1 RECEPTOR 1) ATP BINDING / KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE
AT5G19280

Experimental

Co-crystal Structure

far western blotting

Co-crystallization

FSW = 0.2338

Class A:

plasma membrane

Class B:

extracellular

Class D:

extracellular (p = 0.86)

endoplasmic reticulum (p = 0.46)

cytosol (p = 0.67)

KAPP (KINASE ASSOCIATED PROTEIN PHOSPHATASE) PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN KINASE BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G17750

Experimental

two hybrid

FSW = 0.1333

Class A:

plasma membrane

Class B:

extracellular

Class D:

extracellular (p = 0.86)

endoplasmic reticulum (p = 0.46)

cytosol (p = 0.67)

LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE PUTATIVE
AT5G57360

Experimental

FSW = 0.1558

Class B:

plasma membrane

nucleus

extracellular

cytosol

Class D:

cytosol (p = 0.67)

ZTL (ZEITLUPE) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G02840

Experimental

pull down

FSW = 0.0175

Class B:

plasma membrane

nucleus

extracellular

SR1 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G21850

Experimental

FSW = 0.2825

Unknown

ASK9 (ARABIDOPSIS SKP1-LIKE 9) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G60010

Experimental

FSW = 0.2090

Unknown

ASK13 (ARABIDOPSIS SKP1-LIKE 13) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G10230

Experimental

FSW = 0.2438

Unknown

ASK18 (ARABIDOPSIS SKP1-LIKE 18) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G03160

Experimental

FSW = 0.2010

Unknown

ASK19 (ARABIDOPSIS SKP1-LIKE 19) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G25650

Experimental

FSW = 0.2844

Unknown

ASK15 (ARABIDOPSIS SKP1-LIKE 15) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G20160

Experimental

FSW = 0.3048

Unknown

MEO (MEIDOS) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G03170

Experimental

FSW = 0.2778

Unknown

ASK14 (ARABIDOPSIS SKP1-LIKE 14) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G01620

Experimental

FSW = 0.2179

Unknown

MEE11 (MATERNAL EFFECT EMBRYO ARREST 11)
AT3G05270

Predicted

Gene fusion method

FSW = 0.0345

Unknown

EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF869 PLANT (INTERPROIPR008587) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS MYOSIN HEAVY CHAIN-RELATED (TAIRAT1G775802) HAS 97002 BLAST HITS TO 49715 PROTEINS IN 2003 SPECIES ARCHAE - 1158 BACTERIA - 12418 METAZOA - 49297 FUNGI - 7501 PLANTS - 3801 VIRUSES - 453 OTHER EUKARYOTES - 22374 (SOURCE NCBI BLINK)
AT2G13800

Predicted

Phylogenetic profile method

FSW = 0.0356

Unknown

SERK5 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 5) ATP BINDING / PROTEIN KINASE/ TRANSMEMBRANE RECEPTOR PROTEIN SERINE/THREONINE KINASE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454